Factsheet for Zm00001d038660_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010713_P006	Maize	cytosol	79.72	78.63
Os05t0509400-01	Rice	cytosol, nucleus, plasma membrane, plastid	80.28	77.27
TraesCS1A01G327100.1	Wheat	plastid	75.83	73.39
TraesCS1D01G329200.1	Wheat	plastid	75.83	72.99
TraesCS1B01G340500.1	Wheat	cytosol, plastid	75.56	72.73
HORVU1Hr1G078000.1	Barley	plastid	76.94	67.07
Zm00001d031008_P001	Maize	nucleus	40.56	37.06
Zm00001d041444_P002	Maize	nucleus	38.33	35.03
CDX79489	Canola	cytosol	16.39	18.27
Bra001128.1-P	Field mustard	nucleus	19.44	13.44
CDX74164	Canola	nucleus	19.44	13.41
Zm00001d033274_P005	Maize	nucleus	26.11	12.81
Zm00001d018930_P003	Maize	nucleus	28.33	12.35
CDY40681	Canola	mitochondrion, plasma membrane, plastid, vacuole	18.61	12.34
AT3G04850.1	Thale cress	cytosol	21.67	12.21
Zm00001d041445_P007	Maize	golgi, nucleus, plasma membrane	26.67	11.48
Zm00001d015990_P001	Maize	nucleus	16.67	11.32
Zm00001d031009_P004	Maize	golgi, plasma membrane	25.83	11.18
Zm00001d037461_P001	Maize	cytosol	15.56	10.96
Zm00001d012688_P001	Maize	nucleus	17.22	10.1
Zm00001d043378_P001	Maize	nucleus	16.94	9.98

Protein Annotations

EnsemblPlants:Zm00001d038660_P003	EnsemblPlants:Zm00001d038660_T003	EnsemblPlantsGene:Zm00001d038660	EntrezGene:100284420	InterPro:CRC	InterPro:IPR005172
InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC	PANTHER:PTHR12446	PANTHER:PTHR12446:SF44	PFAM:PF03638	PFscan:PS51634
ProteinID:AQK87134.1	SEG:seg	SMART:SM01114	UniParc:UPI0008424E0A	UniProt:A0A1D6M7Y3	MapMan:15.5.9

Description

CPP-transcription factor 4Protein tesmin/TSO1-like CXC 4

Coordinates

chr6:-:161968078..161971256

Molecular Weight (calculated)

40041.2 Da

IEP (calculated)

8.010

GRAVY (calculated)

-0.746

Length

360 amino acids

Sequence
(BLAST)

001: MEATPISMKP PSPAPAAPPP ATLEPGDLPT HAFGGTELEP SSMNQLAIAP DPKRPRVEEA ADGNGCKHCA CKKSRCLKLY CPCFSGGGYC SDKCGCQPCF
101: NKEAFAETVH TTRKVLLSRQ KRMSMKINRR PEANTEPMVE DAHHSSSSTP PKRGCNCKKS SCLKKYCDCY QDGTGCSLFC RCDDCQNPFG KNEGIMADDS
201: KRYLYTGADL DHSEGEHDFV VERSPRLQSP ISKESSFHQT PPHLRASSRD AHVFPHAISQ WQALPRSWHC SNKRNSSDRA MDDSANYKNS NHDYWQVPKH
301: EDSYSISKCV QILNGMAELS QVEKSVAPDV FLQPGNREIF VSLSGDVRAM WLKRKIQHLA

Best Arabidopsis Sequence Match ( AT3G22760.2 )
(BLAST)

001: MMDNVKKKSD TPDWETLIAA TTELIYGSPR ESEAFSCLLK KTSNSEARLR GSITATSVAV TNTDVVNNES ESVDALSILH RGVRRRCLDF EVKGNNQQTL
101: GESSSSCVVP SIGLHLNTIA MSSKDKNVAN EYSFSGNIKV GVQSSLTPVL HSQHDIVREN ESGKDSGQII EVVPKSLASV DLTPISPKKK RRKSEQSGEG
201: DSSCKRCNCK KSKCLKLYCE CFAAGFYCIE PCSCINCFNK PIHKDVVLAT RKQIESRNPL AFAPKVIRNS DSIIEVGEDA SKTPASARHK RGCNCKKSNC
301: LKKYCECYQG GVGCSINCRC EGCKNAFGRK DGSLFEQDEE NETSGTPGTK KTQQNVELFK PAAPPSTPIP FRQPLAQLPI SSNNRLLPPQ SHFHHGAIGS
401: SSSGIYNIRK PDMSLLSHSR IETITEDIDD MSENLIHSPI TTLSPNSKRV SLSHLDSPES TPWRRNGGGR NLIRSFPTFP SLTPHH

Arabidopsis Description

TCX3Protein tesmin/TSO1-like CXC 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L548]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.