Factsheet for AT3G16160.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28377	Canola	nucleus	55.98	62.8
Bra021165.1-P	Field mustard	nucleus	54.89	61.96
CDY20184	Canola	cytosol	55.16	59.71
HORVU7Hr1G081540.1	Barley	plastid	21.2	26.71
Os06t0332700-00	Rice	nucleus	19.57	23.76
Os08t0369600-01	Rice	cytosol, nucleus, peroxisome	20.65	20.6
TraesCS7B01G242300.1	Wheat	nucleus	26.9	20.41
Os08t0363900-00	Rice	cytosol	19.57	20.28
TraesCS7A01G341100.2	Wheat	nucleus, plastid	26.63	20.16
TraesCS7D01G338500.1	Wheat	nucleus, plastid	26.63	20.16
AT5G25790.2	Thale cress	nucleus	27.45	20.04
AT4G29000.1	Thale cress	nucleus	32.07	19.57
EER89807	Sorghum	cytosol	26.63	19.25
Os02t0274600-00	Rice	cytosol, nucleus	22.83	19.22
AT2G20110.2	Thale cress	nucleus	30.16	19.2
Zm00001d037461_P001	Maize	cytosol	26.63	19.18
TraesCS2B01G144400.2	Wheat	plastid	28.53	17.83
TraesCS2A01G122300.2	Wheat	plastid	28.26	17.69
TraesCS2D01G125000.1	Wheat	plastid	27.45	17.18
HORVU2Hr1G021360.2	Barley	plastid	27.99	16.91
Zm00001d015990_P001	Maize	nucleus	23.1	16.04
KXG30022	Sorghum	nucleus, plastid	23.37	15.84
AT3G22760.1	Thale cress	nucleus	20.11	12.15
AT4G14770.1	Thale cress	nucleus	22.01	12.02
AT3G22780.1	Thale cress	nucleus	21.2	11.22
AT3G04850.1	Thale cress	cytosol	14.95	8.61

Protein Annotations

MapMan:15.5.9	EntrezGene:820861	ProteinID:AEE75778.1	EMBL:AJ630495	ArrayExpress:AT3G16160	EnsemblPlantsGene:AT3G16160
RefSeq:AT3G16160	TAIR:AT3G16160	RefSeq:AT3G16160-TAIR-G	EnsemblPlants:AT3G16160.1	TAIR:AT3G16160.1	EMBL:AY568667
ProteinID:BAB02682.1	InterPro:CRC	EMBL:DQ653089	GO:GO:0003674	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046872
InterPro:IPR005172	InterPro:Lin-54_fam	RefSeq:NP_188237.2	PFAM:PF03638	PFscan:PS51634	PANTHER:PTHR12446
PANTHER:PTHR12446:SF14	UniProt:Q700D0	SMART:SM01114	InterPro:Tesmin/TSO1-like_CXC	UniParc:UPI000035297C	SEG:seg

Description

TCX8Protein tesmin/TSO1-like CXC 8 [Source:UniProtKB/Swiss-Prot;Acc:Q700D0]

Coordinates

chr3:-:5473366..5475347

Molecular Weight (calculated)

41201.7 Da

IEP (calculated)

7.060

GRAVY (calculated)

-0.659

Length

368 amino acids

Sequence
(BLAST)

001: MTGNADSGKI ATEKDPRKLV FTKLEVSPVF RESPVKELPL FPPISREHSE AKDKTDEEGI TSRKHKGCRC KQSKCLKLYC DCFASGVVCT DCDCVDCHNN
101: SEKCDAREAA MVNVLGRNPN AFSEKALGSL TDNQCKAAPD TKPGLLSRGC KCKRTRCLKK YCECFQANLL CSDNCKCINC KNVSEAFQPP AFSAHNSPQV
201: YRRRRDRELT EWNSCPAPLF SIPDNSIQNA LGSPMSCSPK LPYRKKRSLM GYTSTLLPDL GDLCSLLVAA SESATTTAED QNRIFTKPDD KEAIELSSES
301: ESRNVEEEIQ SRGRLIELID VQYNGEEDSQ CKTKTSVNET DIYMEQERAV LETFRDCLQK FIKSRLES

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.