CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10668	Canola	nucleus, plastid	92.71	88.68
Bra033920.1-P	Field mustard	plastid	89.07	85.04
CDY67857	Canola	nucleus, plastid	74.13	67.38
CDY64240	Canola	cytosol, plastid	71.77	66.11
AT3G22760.1	Thale cress	nucleus	65.21	58.78
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	29.33	56.29
Os03t0638300-01	Rice	cytosol	10.75	52.21
CDY29770	Canola	nucleus, plastid	56.83	48.22
CDY42785	Canola	nucleus, plastid	56.28	47.03
CDY54821	Canola	nucleus	51.55	41.68
CDY64242	Canola	nucleus	19.13	39.77
CDY10669	Canola	nucleus	51.55	37.83
KRH77830	Soybean	nucleus	49.18	34.88
KRH27657	Soybean	nucleus	48.09	34.11
KRH35487	Soybean	nucleus	47.18	34.08
KRG91344	Soybean	nucleus	46.27	32.82
PGSC0003DMT400082098	Potato	nucleus	48.09	31.96
Solyc09g082500.2.1	Tomato	nucleus	47.91	31.73
VIT_14s0030g01800.t01	Wine grape	nucleus	45.72	31.14
CDY44573	Canola	cytosol	8.01	30.99
GSMUA_Achr9P10600_001	Banana	nucleus	40.8	30.35
CDX79489	Canola	cytosol	17.49	29.72
GSMUA_Achr8P20460_001	Banana	nucleus	42.81	29.19
CDX74164	Canola	nucleus	26.78	28.16
GSMUA_Achr9P25670_001	Banana	nucleus	41.71	27.62
HORVU5Hr1G012950.1	Barley	nucleus	38.07	27.28
TraesCS5A01G053800.1	Wheat	nucleus	37.89	27.19
TraesCS5D01G065300.1	Wheat	nucleus	37.89	27.19
CDY71540	Canola	nucleus, plastid	13.11	27.17
TraesCS5B01G062400.1	Wheat	nucleus	37.7	27.06
Os12t0605500-01	Rice	nucleus	37.34	26.97
EES17353	Sorghum	nucleus	37.52	26.86
CDY40681	Canola	mitochondrion, plasma membrane, plastid, vacuole	26.41	26.7
CDY67603	Canola	cytosol	13.66	26.13
OQU88523	Sorghum	nucleus	36.61	25.9
TraesCS4D01G026100.1	Wheat	nucleus	36.43	25.41
Os07t0176200-01	Rice	nucleus	35.88	25.19
TraesCS4B01G028500.1	Wheat	nucleus	35.88	24.97
Zm00001d041445_P007	Maize	golgi, nucleus, plasma membrane	37.34	24.52
EER93767	Sorghum	nucleus	32.97	24.23
Zm00001d031009_P004	Maize	golgi, plasma membrane	36.43	24.04
TraesCS4A01G284600.2	Wheat	nucleus	36.61	24.01
Zm00001d018930_P003	Maize	nucleus	35.88	23.85
Zm00001d033274_P005	Maize	nucleus	31.69	23.71
CDX92957	Canola	nucleus, plastid	50.27	22.7
CDX94892	Canola	nucleus, plastid	51.18	22.64
HORVU4Hr1G004280.15	Barley	nucleus, plastid	35.52	21.13
CDY19795	Canola	nucleus	16.76	20.22
CDY20184	Canola	cytosol	12.39	20.0
CDY28377	Canola	nucleus	11.84	19.82
CDX88196	Canola	nucleus	17.67	19.02
CDY05340	Canola	nucleus	16.21	18.62
CDY65712	Canola	nucleus	15.12	18.12
CDX80536	Canola	nucleus	17.12	18.11
CDY05722	Canola	nucleus	16.21	17.98
CDY31991	Canola	nucleus	16.21	17.59
CDX97461	Canola	nucleus	16.94	16.43
CDY66476	Canola	nucleus	16.58	15.88
CDY35239	Canola	nucleus	16.39	15.44
CDX92907	Canola	nucleus	15.48	15.23
CDY06853	Canola	cytosol, nucleus, plastid	16.39	6.39

Protein Annotations

EnsemblPlants:CDY54822	EnsemblPlantsGene:GSBRNA2T00014689001	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF21	PFAM:PF03638	PFscan:PS51634	ProteinID:CDY54822	ProteinID:CDY54822.1
SEG:seg	SMART:SM01114	UniParc:UPI0004EEA839	UniProt:A0A078IXG0	MapMan:15.5.9	:

Description

BnaCnng27640DBnaCnng27640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXG0]

Coordinates

chrLK033353:-:49748..52376

Molecular Weight (calculated)

60177.3 Da

IEP (calculated)

8.033

GRAVY (calculated)

-0.576

Length

549 amino acids

Sequence
(BLAST)

001: MDTPPKNVTQ MENPISKLKL ENSPVFNYIN SLSPIKPVRS LPIAQTFGSL SYSSPPSVFT SPHVSSHKGS RFKSDHNHVP TSVGEDEALR ETEPPQILQN
101: ECTTDLLKMC DGNVKQKSET PDWDAMISDS SDILILDSVN DSEASRCFLE RPSDSKTRSL GVAKSTLEPL MNIDDALHRG VRRRCLGFEQ TPVASSSRCA
201: VPSIGLHFNT IAMSSNDNNV GNEYSLSGNI KVGLQSSITS VLNSQDNVGV SETGEDAGQG VEEGPKRKFG QAGEGESSCK RCNCKRSKCL KLYCECFAAG
301: VYCIGPCSCV DCFNKPIHED TVMATRKQIE SRNPLAFAPK VIGNSDSIME VGDDAKSKTP ASARHKRGCN CKKSNCLKKY CECYQSGVGC SINCRCEGCK
401: NAFGRKDGSS FTSMDKENET SSRGRTEKQP STPMPLRQPL AQLPISSNNM LLTHQHLHGA SGSSLHMSQS FRRQDMSLMS HSKIEIITEE RRADNIENLI
501: ESPMTNMINA VSPNSKRVSL PMELSPWRRN GGRKLLLSIP TFPSLTPHH

Best Arabidopsis Sequence Match ( AT3G22760.1 )
(BLAST)

001: MDTPEKSETQ IGTPVSKLKV EDSPVFSYIC NLSPIKTIKP IPITCPLSSL NYASPPSVFT SPHAVSHKES RFRSQKDVSA SKEVGEEEAL VGSEPEQSYK
101: NDCNTPRVTN DVKDNGCGKD LQVMMDNVKK KSDTPDWETL IAATTELIYG SPRESEAFSC LLKKTSNSEA RLRGSITATS VAVTNTDVVN NESESVDALS
201: ILHRGVRRRC LDFEVKGNNQ QTLGESSSSC VVPSIGLHLN TIAMSSKDKN VANEYSFSGN IKVGVQSSLT PVLHSQHDIV RENESGKDSG QIIEVVPKSL
301: ASVDLTPISP KKKRRKSEQS GEGDSSCKRC NCKKSKCLKL YCECFAAGFY CIEPCSCINC FNKPIHKDVV LATRKQIESR NPLAFAPKVI RNSDSIIEVG
401: EDASKTPASA RHKRGCNCKK SNCLKKYCEC YQGGVGCSIN CRCEGCKNAF GRKDGSLFEQ DEENETSGTP GTKKTQQNVE LFKPAAPPST PIPFRQPLAQ
501: LPISSNNRLL PPQSHFHHGA IGSSSSGIYN IRKPDMSLLS HSRIETITED IDDMSENLIH SPITTLSPNS KRVSLSHLDS PESTPWRRNG GGRNLIRSFP
601: TFPSLTPHH

Arabidopsis Description

TCX3Protein tesmin/TSO1-like CXC 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L548]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.