CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77830	Soybean	nucleus	92.76	92.76
KRG91344	Soybean	nucleus	67.57	67.57
KRH35487	Soybean	nucleus	65.63	66.84
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	20.16	54.55
Os03t0638300-01	Rice	cytosol	7.88	53.98
CDY10668	Canola	nucleus, plastid	36.18	48.78
CDY54822	Canola	cytosol, plastid	34.11	48.09
CDY67857	Canola	nucleus, plastid	37.34	47.85
Bra023810.1-P	Field mustard	nucleus, plastid	36.56	47.8
Bra033920.1-P	Field mustard	plastid	35.4	47.65
Bra036900.1-P	Field mustard	nucleus, plastid	39.66	47.6
CDY29770	Canola	nucleus, plastid	39.66	47.45
CDY64240	Canola	cytosol, plastid	36.43	47.32
AT4G14770.1	Thale cress	nucleus	41.09	47.18
CDY42785	Canola	nucleus, plastid	39.79	46.88
Solyc09g082500.2.1	Tomato	nucleus	48.97	45.72
PGSC0003DMT400082098	Potato	nucleus	48.58	45.52
AT3G22760.1	Thale cress	nucleus	35.27	44.83
VIT_14s0030g01800.t01	Wine grape	nucleus	45.99	44.17
AT3G22780.1	Thale cress	nucleus	39.41	43.88
CDY54821	Canola	nucleus	38.24	43.59
KRH00620	Soybean	cytosol	6.07	43.52
CDY64242	Canola	nucleus	13.82	40.53
Bra033919.1-P	Field mustard	nucleus	37.98	39.3
CDY10669	Canola	nucleus	37.98	39.3
GSMUA_Achr8P20460_001	Banana	nucleus	39.92	38.39
GSMUA_Achr9P10600_001	Banana	nucleus	36.18	37.94
GSMUA_Achr9P25670_001	Banana	nucleus	38.37	35.83
Os07t0176200-01	Rice	nucleus	35.66	35.29
OQU88523	Sorghum	nucleus	35.01	34.92
HORVU5Hr1G012950.1	Barley	nucleus	34.24	34.6
TraesCS5D01G065300.1	Wheat	nucleus	33.85	34.25
TraesCS5A01G053800.1	Wheat	nucleus	33.59	33.99
TraesCS5B01G062400.1	Wheat	nucleus	33.59	33.99
TraesCS4D01G026100.1	Wheat	nucleus	34.5	33.93
Os12t0605500-01	Rice	nucleus	32.82	33.42
TraesCS4B01G028500.1	Wheat	nucleus	33.85	33.21
EES17353	Sorghum	nucleus	32.82	33.12
Zm00001d018930_P003	Maize	nucleus	34.5	32.32
TraesCS4A01G284600.2	Wheat	nucleus	34.88	32.26
Zm00001d041445_P007	Maize	golgi, nucleus, plasma membrane	32.95	30.5
Zm00001d031009_P004	Maize	golgi, plasma membrane	32.43	30.17
EER93767	Sorghum	nucleus	28.04	29.05
HORVU4Hr1G004280.15	Barley	nucleus, plastid	34.24	28.71
Zm00001d033274_P005	Maize	nucleus	25.71	27.11
KRH05122	Soybean	nucleus, plastid	29.59	25.33
KRH39836	Soybean	nucleus, plastid	28.55	25.23
Bra001884.1-P	Field mustard	nucleus, plastid	37.34	23.63
CDX92957	Canola	nucleus, plastid	36.82	23.44
CDX94892	Canola	nucleus, plastid	37.08	23.13
KRH48373	Soybean	nucleus	13.18	18.15
KRH41552	Soybean	nucleus	12.79	17.97
KRH39300	Soybean	nucleus	12.92	17.89
KRH60264	Soybean	nucleus	12.79	17.65
KRH62039	Soybean	nucleus	12.66	16.75
KRH52709	Soybean	nucleus	12.4	16.47

Protein Annotations

EMBL:ACUP02006731	EnsemblPlants:KRH27657	EnsemblPlantsGene:GLYMA_11G006900	EntrezGene:100815907	InterPro:CRC	InterPro:IPR005172
InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC	PANTHER:PTHR12446	PANTHER:PTHR12446:SF21	PFAM:PF03638	PFscan:PS51634
ProteinID:KRH27657	ProteinID:KRH27657.1	SEG:seg	SMART:SM01114	UniParc:UPI000233D559	UniProt:K7LMD8
MapMan:15.5.9	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:487543..492345

Molecular Weight (calculated)

84816.7 Da

IEP (calculated)

6.819

GRAVY (calculated)

-0.661

Length

774 amino acids

Sequence
(BLAST)

001: MDTPERNQIT ATLSMFEDSP VFNYINSLSP IKPVKSVPIS QTFNSLSFSS PPSVFTSPHV SCLKESRFLR RHNPLGTSKP KVSSEDVIKV HSSEETLADT
101: TRAHHNSSKL QEENTGKGIS LRDASLELSR EHIRFSDELP KALKYNCGSP GYDHPPCGDE ANSLLELPGE AAENVGYVQE GCKTDSVEGE VHLQEICQME
201: PKSEGPDCYW DSLIPDAPDM LIFNSPGEAE AFKGLMHKPL DSSIRLSKFM SMLPHSTINN GRKMHIVDSV ASGSAHEIED NHSEPMTATG TSQTQDNLAD
301: VALVTSNSNE KANDQLVSVT HRTIRRRCLD FEMANVQRKN SDDNSNIGFS TSESDERNVA NEKQLLPAKR NGNLQRGILQ GIGLHLNALA ALKEYNGTQV
401: EKLSSGRQLS LPSSTSLQIT TSQEHQHLSL VPVSSERELD PSDIGVHPAE DCSQPSAYMA GEDFNQNSPR MKRRKSETPG DTEGCKRCNC KKSKCLKLYC
501: ECFAAGVYCI EPCSCQDCFN KPIHEDTVLQ TRKQIESRNP LAFAPKVIRN SDSVPEIGDD PNKTPASARH KRGCNCKKSS CLKKYCECYQ GGVGCSISCR
601: CEGCKNAFGR KDGSAPVGIE TDPEETEASD KGMVEKTLQK TEIQNTENHP DSATVSTPLR LSRPLLPLPF SSKGKPPRSF VTTISGSALF ANQKLGKPNP
701: LWSQAKHFQT VPDEEMPDIL RGDSSPITCI KTSSPNGKRI SSPNCDLGLS PSRRGGRKLI LQSIPSFPSL TPHP

Best Arabidopsis Sequence Match ( AT4G14770.1 )
(BLAST)

001: MDTPQKSITQ IGTPISKSRF EDSPVFNYIN SLSPIRPVRS IPNPNQFSSL NFTSPPSVFT SPHLTSSHKE SRFFKTHNSS SSDPTNSVES QEDESTSHEE
101: VPAEGEDTKG LNIDDCMREE ASVETNLDDS VASPCGGNTT DLSLVPYAPT RGEDGSCEDN GMELQKMHDN VQGKTETPDW ESLIADASEL LIFDSPDASE
201: AFRCFMMQRA SNSEARFRNG VEKQTMQHDS NKEPESANAI PYEAVSLLHR GIRRRCLDFE MPGNKQTSSE NNTAACESSS RCVVPSIGLH LNAILMSSKD
301: CKTNVTQDYS CSANIQVGLQ RSISTLQDSL DQTENEIRED ADQDVPVEPA LQELNLSSPK KKRVKLDSGE GESCKRCNCK KSKCLKLYCE CFAAGVYCIE
401: PCSCIDCFNK PIHEDVVLAT RKQIESRNPL AFAPKVIRNS DSVQETGDDA SKTPASARHK RGCNCKKSNC LKKYCECYQG GVGCSINCRC EGCKNAFGRK
501: DGSSIDMEAE QEEENETSEK SRTAKSQQNT EVLMRKDMSS ALPTTPTPIY RPELVQLPFS SSKNRMPPPQ SLLGGGSSSG IFNSQYLRKP DISLSQSRIE
601: KSFETVAVDG AEQMPEILIH SPIPNIKSVS PNGKRVSPPH MESSSSGSIL GRRNGGRKLI LQSIPSFPSL TPQH

Arabidopsis Description

TCX2Protein tesmin/TSO1-like CXC 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JIF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.