Factsheet for HORVU5Hr1G012950.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G053800.1	Wheat	nucleus	96.08	96.21
TraesCS5B01G062400.1	Wheat	nucleus	95.95	96.08
TraesCS5D01G065300.1	Wheat	nucleus	95.56	95.69
Os12t0605500-01	Rice	nucleus	69.71	70.26
EES17353	Sorghum	nucleus	66.45	66.36
Zm00001d041445_P007	Maize	golgi, nucleus, plasma membrane	66.84	61.24
Zm00001d031009_P004	Maize	golgi, plasma membrane	65.4	60.22
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	16.58	44.41
CDY54822	Canola	cytosol, plastid	27.28	38.07
CDY67857	Canola	nucleus, plastid	29.5	37.42
Bra023810.1-P	Field mustard	nucleus, plastid	28.72	37.16
CDY10668	Canola	nucleus, plastid	27.81	37.11
CDY64240	Canola	cytosol, plastid	28.85	37.08
GSMUA_Achr9P10600_001	Banana	nucleus	35.38	36.72
Bra036900.1-P	Field mustard	nucleus, plastid	30.81	36.59
CDY29770	Canola	nucleus, plastid	30.68	36.32
AT4G14770.1	Thale cress	nucleus	31.85	36.2
Bra033920.1-P	Field mustard	plastid	27.15	36.17
AT3G22760.1	Thale cress	nucleus	28.33	35.63
CDY42785	Canola	nucleus, plastid	30.55	35.62
VIT_05s0020g03880.t01	Wine grape	nucleus	35.38	35.52
GSMUA_Achr8P20460_001	Banana	nucleus	37.08	35.28
GSMUA_Achr9P25670_001	Banana	nucleus	37.6	34.74
KRH35487	Soybean	nucleus	34.33	34.61
KRG91344	Soybean	nucleus	34.6	34.24
KRH27657	Soybean	nucleus	34.6	34.24
CDY64242	Canola	nucleus	11.75	34.09
KRH77830	Soybean	nucleus	34.33	33.98
CDY54821	Canola	nucleus	29.5	33.28
VIT_14s0030g01800.t01	Wine grape	nucleus	34.33	32.63
AT3G22780.1	Thale cress	nucleus	29.5	32.52
HORVU4Hr1G004280.15	Barley	nucleus, plastid	36.42	30.23
Solyc09g082500.2.1	Tomato	nucleus	32.64	30.16
Bra033919.1-P	Field mustard	nucleus	29.37	30.08
PGSC0003DMT400082098	Potato	nucleus	32.38	30.02
CDY10669	Canola	nucleus	29.11	29.81
HORVU5Hr1G013160.11	Barley	nucleus, plastid	14.49	27.14
HORVU1Hr1G078000.1	Barley	plastid	13.97	25.91
HORVU7Hr1G081540.1	Barley	plastid	9.14	23.97
CDX92957	Canola	nucleus, plastid	29.77	18.75
CDX94892	Canola	nucleus, plastid	30.16	18.61
Bra001884.1-P	Field mustard	nucleus, plastid	29.63	18.56
HORVU3Hr1G073470.1	Barley	cytosol, nucleus, plastid	11.62	14.54
HORVU2Hr1G021360.2	Barley	plastid	10.84	13.63

Protein Annotations

EnsemblPlants:HORVU5Hr1G012950.1	EnsemblPlantsGene:HORVU5Hr1G012950	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF21	PFAM:PF03638	PFscan:PS51634	SEG:seg	SMART:SM01114
UniParc:UPI000B47C155	UniProt:A0A287QEM8	MapMan:15.5.9	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:40122440..40135973

Molecular Weight (calculated)

82328.5 Da

IEP (calculated)

7.608

GRAVY (calculated)

-0.630

Length

766 amino acids

Sequence
(BLAST)

001: MDTPDRPRAG AAAGFEDSPV FNFINNLSPI PPPKPQDSSH NVHLFKSSDL APVSSIFASP HVNPPKESKI LIRDDSVQLS QDSNSPNSVR TRLGSAIRLI
101: KCKNIVSENC SFTCHLNQGP IDSSANRSNS TSKLPQTIQF VGDSSECDKN QNADGKKDLA RDQESIELEG VLIDHTGPDK IDPSQPGRIV HENQQCEQQK
201: DGFIAYDGDY LITHESSMDM LRLAPPCEAD TQLVNETLNA DNVFSGNSLL TDGPGGSYIN NVAHDPHLYW DGPVEGPTTD YTPQLLPGAC QSQSVSNDQI
301: CNAVEEPSDH MPTDQSSLSQ NMRGMRRRCL FNEKAGAVNK AAKKTSDRHS ANTTTPRCKT NSGDKPVRTP PCALPGIGLH LNALAPISTD KIVPQAAQSS
401: ISQASNFPCA VSSSSTSEPN IVNEDSSQAI VVANADESGQ GSPKKKRHKF DDGDGTSCKR CSCKKSKCLK LYCECFHAGV FCSEPCSCQD CLNKPSNMEI
501: VLSTRKQIES RNPLAFAPKV IRTSEPGQES GEYSNRTPAS ARHKRGCNCK KSSCLKKYCE CYQGGVGCSI SCRCEGCKNA FGRREGLGPL NIEEAKQGHE
601: ENSACVKEEK KEDGNNQLVI CPAANPAPAE NVLTTPSAMD IRPLASLPPS SSKRPRSTKK ALGHPSRLCN SQAPLKTDTL LSPFENYAEI MFGVGTSDSL
701: KGGLSPQTSV KVVSPNKKRV SPPRIGTGLS PICKSGRKLI LKSIPSFPSL CGDVNNADTN TTSPAP

Best Arabidopsis Sequence Match ( AT4G14770.2 )
(BLAST)

001: MDSPVFNYIN SLSPIRPVRS IPNPNQFSSL NFTSPPSVFT SPHLTSSHKE SRFFKTHNSS SSDPTNSVES QEDESTSHEE VPAEGEDTKG LNIDDCMREE
101: ASVETNLDDS VASPCGGNTT DLSLVPYAPT RGEDGSCEDN GMELQKMHDN VQGKTETPDW ESLIADASEL LIFDSPDASE AFRCFMMQRA SNSEARFRNG
201: VEKQTMQHDS NKEPESANAI PYEAVSLLHR GIRRRCLDFE MPGNKQTSSE NNTAACESSS RCVVPSIGLH LNAILMSSKD CKTNVTQDYS CSANIQVGLQ
301: RSISTLQDSL DQTENEIRED ADQDVPVEPA LQELNLSSPK KKRVKLDSGE GESCKRCNCK KSKCLKLYCE CFAAGVYCIE PCSCIDCFNK PIHEDVVLAT
401: RKQIESRNPL AFAPKVIRNS DSVQETGDDA SKTPASARHK RGCNCKKSNC LKKYCECYQG GVGCSINCRC EGCKNAFGRK DGSSIDMEAE QEEENETSEK
501: SRTAKSQQNT EVLMRKDMSS ALPTTPTPIY RPELVQLPFS SSKNRMPPPQ SLLGGGSSSG IFNSQYLRKP DISLSQSRIE KSFETVAVDG AEQMPEILIH
601: SPIPNIKSVS PNGKRVSPPH MESSSSGSIL GRRNGGRKLI LQSIPSFPSL TPQH

Arabidopsis Description

TCX2Protein tesmin/TSO1-like CXC 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JIF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.