CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35487	Soybean	nucleus	89.15	90.79
KRH77830	Soybean	nucleus	68.99	68.99
KRH27657	Soybean	nucleus	67.57	67.57
Os03t0638300-01	Rice	cytosol	8.01	54.87
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	18.35	49.65
CDY29770	Canola	nucleus, plastid	40.05	47.91
CDY67857	Canola	nucleus, plastid	36.95	47.35
Bra036900.1-P	Field mustard	nucleus, plastid	39.41	47.29
Bra023810.1-P	Field mustard	nucleus, plastid	36.05	47.13
AT4G14770.1	Thale cress	nucleus	40.96	47.03
CDY10668	Canola	nucleus, plastid	34.75	46.86
CDY64240	Canola	cytosol, plastid	36.05	46.81
CDY42785	Canola	nucleus, plastid	39.41	46.42
CDY54822	Canola	cytosol, plastid	32.82	46.27
Bra033920.1-P	Field mustard	plastid	33.98	45.74
AT3G22760.1	Thale cress	nucleus	35.01	44.5
Solyc09g082500.2.1	Tomato	nucleus	47.29	44.15
PGSC0003DMT400082098	Potato	nucleus	46.77	43.83
KRH00620	Soybean	cytosol	6.07	43.52
AT3G22780.1	Thale cress	nucleus	38.63	43.02
VIT_14s0030g01800.t01	Wine grape	nucleus	43.8	42.06
CDY54821	Canola	nucleus	36.69	41.83
CDY64242	Canola	nucleus	13.18	38.64
GSMUA_Achr9P10600_001	Banana	nucleus	36.18	37.94
GSMUA_Achr8P20460_001	Banana	nucleus	39.28	37.76
CDY10669	Canola	nucleus	35.92	37.17
Bra033919.1-P	Field mustard	nucleus	35.92	37.17
GSMUA_Achr9P25670_001	Banana	nucleus	38.11	35.59
TraesCS5A01G053800.1	Wheat	nucleus	34.24	34.64
HORVU5Hr1G012950.1	Barley	nucleus	34.24	34.6
Os07t0176200-01	Rice	nucleus	34.88	34.53
TraesCS5D01G065300.1	Wheat	nucleus	34.11	34.51
TraesCS5B01G062400.1	Wheat	nucleus	33.85	34.25
OQU88523	Sorghum	nucleus	33.72	33.63
Os12t0605500-01	Rice	nucleus	32.82	33.42
EES17353	Sorghum	nucleus	32.82	33.12
TraesCS4D01G026100.1	Wheat	nucleus	32.69	32.15
TraesCS4B01G028500.1	Wheat	nucleus	32.04	31.43
TraesCS4A01G284600.2	Wheat	nucleus	33.33	30.82
Zm00001d018930_P003	Maize	nucleus	32.56	30.51
Zm00001d041445_P007	Maize	golgi, nucleus, plasma membrane	32.95	30.5
Zm00001d031009_P004	Maize	golgi, plasma membrane	32.17	29.93
EER93767	Sorghum	nucleus	27.78	28.78
Zm00001d033274_P005	Maize	nucleus	26.36	27.79
HORVU4Hr1G004280.15	Barley	nucleus, plastid	32.69	27.41
KRH05122	Soybean	nucleus, plastid	28.94	24.78
KRH39836	Soybean	nucleus, plastid	27.52	24.32
Bra001884.1-P	Field mustard	nucleus, plastid	37.21	23.55
CDX92957	Canola	nucleus, plastid	36.3	23.11
CDX94892	Canola	nucleus, plastid	35.66	22.24
KRH48373	Soybean	nucleus	12.79	17.62
KRH39300	Soybean	nucleus	12.66	17.53
KRH41552	Soybean	nucleus	12.02	16.88
KRH60264	Soybean	nucleus	11.89	16.4
KRH62039	Soybean	nucleus	12.02	15.9
KRH52709	Soybean	nucleus	11.76	15.61

Protein Annotations

EMBL:ACUP02012677	EnsemblPlants:KRG91344	EnsemblPlantsGene:GLYMA_20G149100	EntrezGene:100811662	InterPro:CRC	InterPro:IPR005172
InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC	PANTHER:PTHR12446	PANTHER:PTHR12446:SF21	PFAM:PF03638	PFscan:PS51634
ProteinID:KRG91344	ProteinID:KRG91344.1	SEG:seg	SMART:SM01114	UniParc:UPI0001E2455C	UniProt:K7N3J0
MapMan:15.5.9	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:38772168..38777904

Molecular Weight (calculated)

84294.7 Da

IEP (calculated)

6.379

GRAVY (calculated)

-0.658

Length

774 amino acids

Sequence
(BLAST)

001: MDTPDRSKIN TPLSQFEDSP VFKYISNLSP IEPVKSVHVT QTFNSYSFSS PPSVFTSPHG NCHKESRFLR RHNLLETSKP KVSSEDVNNV YSCEETPADS
101: AQACHESSEQ QENTAQKISV ADASIEPCNE NKNPNISIEL PQVLKYNLGS PGYEPLLYGD EANSLLELPG NGKPASDVAS VPEGSEKDSI EGEMHLPGLC
201: QIEEAKVEGQ DCGVDSLITE ASDLLMFSPP EAFKGLNKQL NPSIELSNIM TVIPQFATND GQQMHIGNAV ASGSEHEIED HPSESAAATG TSQRQDNLGN
301: LALVTSNPSE KMDNKLVYVT HRGIRRRCLD FEMASVQRRN PADNSNTNSS TAKSEERNVS NEKQLLPTKH SGDSRRCVLP GIGLHLNALA SLKDCKNIKI
401: DTLSSGRQPN LLSSPSSVQL SPSQEHQLSL VPASVERDLE PLENEVQPGE DCTQSLVLVQ MAGEDFQQNS PKKKRRKLEP AGEGESCKRC NCKKSKCLKL
501: YCECFAAGVY CIEPCACRDC FNKPIHVETV LQTRQQIESR NPLAFAPKVI RSSDSVSEIG DDLNKTPASA RHKRGCNCKK SSCLKKYCEC YQGGVGCSVS
601: CRCEGCKNTY GRKDGSVPSG LEAEPEEETE ACEKGVVENA SWKTETQNTE DHPDQSLATT PLPLSRSLLP LSFSSKGKPP RSFVTTISSS GLFVSQKLGK
701: SNAPRSQHQP KCVKPLQTVP DDDSPVTCIK TSSPNGKRIS SPNCDVGSSP TTRRGGRKLI LQSISSFPSL TPHH

Best Arabidopsis Sequence Match ( AT4G14770.1 )
(BLAST)

001: MDTPQKSITQ IGTPISKSRF EDSPVFNYIN SLSPIRPVRS IPNPNQFSSL NFTSPPSVFT SPHLTSSHKE SRFFKTHNSS SSDPTNSVES QEDESTSHEE
101: VPAEGEDTKG LNIDDCMREE ASVETNLDDS VASPCGGNTT DLSLVPYAPT RGEDGSCEDN GMELQKMHDN VQGKTETPDW ESLIADASEL LIFDSPDASE
201: AFRCFMMQRA SNSEARFRNG VEKQTMQHDS NKEPESANAI PYEAVSLLHR GIRRRCLDFE MPGNKQTSSE NNTAACESSS RCVVPSIGLH LNAILMSSKD
301: CKTNVTQDYS CSANIQVGLQ RSISTLQDSL DQTENEIRED ADQDVPVEPA LQELNLSSPK KKRVKLDSGE GESCKRCNCK KSKCLKLYCE CFAAGVYCIE
401: PCSCIDCFNK PIHEDVVLAT RKQIESRNPL AFAPKVIRNS DSVQETGDDA SKTPASARHK RGCNCKKSNC LKKYCECYQG GVGCSINCRC EGCKNAFGRK
501: DGSSIDMEAE QEEENETSEK SRTAKSQQNT EVLMRKDMSS ALPTTPTPIY RPELVQLPFS SSKNRMPPPQ SLLGGGSSSG IFNSQYLRKP DISLSQSRIE
601: KSFETVAVDG AEQMPEILIH SPIPNIKSVS PNGKRVSPPH MESSSSGSIL GRRNGGRKLI LQSIPSFPSL TPQH

Arabidopsis Description

TCX2Protein tesmin/TSO1-like CXC 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JIF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.