CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39300	Soybean	nucleus	94.66	95.17
KRH60264	Soybean	nucleus	80.43	80.57
KRH41552	Soybean	nucleus	77.22	78.77
VIT_11s0016g03680.t01	Wine grape	nucleus, plastid	64.23	68.89
PGSC0003DMT400000824	Potato	plastid	54.98	63.32
CDY71540	Canola	nucleus, plastid	29.72	63.02
Solyc12g007180.1.1	Tomato	nucleus	55.69	62.85
CDY67603	Canola	cytosol	31.85	62.37
CDY05722	Canola	nucleus	50.18	56.97
Bra041042.1-P	Field mustard	nucleus	50.18	56.06
CDY31991	Canola	nucleus	50.18	55.73
CDY35239	Canola	nucleus	54.09	52.14
AT4G29000.1	Thale cress	nucleus	55.69	51.91
GSMUA_Achr9P06330_001	Banana	cytosol	46.44	51.58
CDX97461	Canola	nucleus	51.6	51.24
Bra011075.1-P	Field mustard	nucleus	47.86	50.95
AT2G20110.2	Thale cress	nucleus	51.6	50.17
CDY66476	Canola	nucleus	51.07	50.09
Bra010348.1-P	Field mustard	nucleus	50.89	49.83
CDX92907	Canola	nucleus	48.93	49.28
GSMUA_Achr2P09150_001	Banana	cytosol	45.55	49.04
Bra024171.1-P	Field mustard	nucleus	47.51	48.37
GSMUA_Achr6P26760_001	Banana	nucleus	47.86	48.29
Os01t0761100-01	Rice	cytosol, nucleus, plastid	47.69	43.3
GSMUA_Achr3P31550_001	Banana	nucleus	44.66	42.91
KRH62039	Soybean	nucleus	44.48	42.73
TraesCS3A01G304800.1	Wheat	plastid	45.73	41.79
KRH52709	Soybean	nucleus	43.24	41.68
HORVU3Hr1G073470.1	Barley	cytosol, nucleus, plastid	45.37	41.67
TraesCS3B01G331700.1	Wheat	plastid	45.55	41.63
TraesCS3D01G297000.1	Wheat	plastid	45.37	41.46
KXG33424	Sorghum	nucleus	45.02	41.27
Zm00001d012688_P001	Maize	nucleus	44.48	40.72
Zm00001d043378_P001	Maize	nucleus	43.24	39.77
KRH00620	Soybean	cytosol	4.98	25.93
CDY06853	Canola	cytosol, nucleus, plastid	53.74	21.45
KRH77830	Soybean	nucleus	18.68	13.57
KRH27657	Soybean	nucleus	18.15	13.18
KRH35487	Soybean	nucleus	17.79	13.16
KRG91344	Soybean	nucleus	17.62	12.79
KRH05122	Soybean	nucleus, plastid	16.73	10.4
KRH39836	Soybean	nucleus, plastid	16.19	10.39

Protein Annotations

EMBL:ACUP02004225	EnsemblPlants:KRH48373	EnsemblPlantsGene:GLYMA_07G085300	EntrezGene:100818116	InterPro:CRC	InterPro:IPR005172
InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC	PANTHER:PTHR12446	PANTHER:PTHR12446:SF14	PFAM:PF03638	PFscan:PS51634
ProteinID:KRH48373	ProteinID:KRH48373.1	SEG:seg	SMART:SM01114	UniParc:UPI0006ED76A5	UniProt:A0A0R0J7V9
MapMan:15.5.9	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:7855786..7864019

Molecular Weight (calculated)

60521.7 Da

IEP (calculated)

7.147

GRAVY (calculated)

-0.517

Length

562 amino acids

Sequence
(BLAST)

001: MGEGEGGGDC VQKNASLSEV VAPSAASLEV PAKKLARQLD FTGAPEHPPQ LPVAVLPLPL QAPPARVGKP ESPKSRSRPN FEMKDATPKK QKQCNCKHSK
101: CLKLYCECFA SGIYCDGCNC VNCFNNVENE AARREAVEAT LERNPNAFRP KIASSPHGTR DSREDAGEVL ILGKHNKGCH CKKSGCLKKY CECFQANILC
201: SENCKCMDCK NFEGSEERQA LFHGDQNNMA YIQQAANAAI TGAIGSSGYS SPPVSKKRKG QELFFWPTTK DPSISKLGQQ AHQVNHVRGP APSSSLSPVS
301: GARVGTATLG PSKFMYRSLL ADIIQPQHLK ELCSVLVLVS GQAAKTLTDQ KILMEKQAED QTETSLASSS QEQLPSQKEG HIEKTVADDC SSANQTDKIS
401: PDNSSSDGAD VPKGRPMSPG TLALMCDEQD TMFMTTASPI APMAHACNTS SQFPYGQGMT EVYPEQERIV LTKFRDFLNR VITMGEINET KCSSLTRNEL
501: ESQKDPIING IGNASSEIVL QQGATSNGVT KPGSPLVTTS TSMIPGNIAE NGETKVKIEK EI

Best Arabidopsis Sequence Match ( AT4G29000.1 )
(BLAST)

001: MGEDGGGGEF PPKKDGVEEG FPTKKPARQL DFTGGSDEHS LSKPAAPTVV ATSVKPIISS SVPSTIRPGM TIAIGQVTQV RPTLPMATTM SNPPSQSQIV
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP

Arabidopsis Description

TCX5Protein tesmin/TSO1-like CXC 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.