CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66476	Canola	nucleus	91.52	90.4
CDY71540	Canola	nucleus, plastid	37.99	81.13
CDY67603	Canola	cytosol	40.11	79.09
CDY35239	Canola	nucleus	80.92	78.56
CDY44573	Canola	cytosol	18.9	75.35
CDX92907	Canola	nucleus	72.44	73.48
AT4G29000.1	Thale cress	nucleus	75.8	71.14
CDY31991	Canola	nucleus	57.6	64.43
CDY05722	Canola	nucleus	56.18	64.24
VIT_11s0016g03680.t01	Wine grape	nucleus, plastid	50.53	54.58
KRH39300	Soybean	nucleus	51.94	52.59
KRH48373	Soybean	nucleus	51.24	51.6
KRH41552	Soybean	nucleus	49.65	51.0
KRH60264	Soybean	nucleus	50.18	50.62
PGSC0003DMT400000824	Potato	plastid	43.29	50.2
Solyc12g007180.1.1	Tomato	nucleus	43.64	49.6
CDX88196	Canola	nucleus	33.39	37.06
CDX80536	Canola	nucleus	33.39	36.42
CDY19795	Canola	nucleus	29.15	36.26
CDY65712	Canola	nucleus	28.98	35.81
CDY06853	Canola	cytosol, nucleus, plastid	80.57	32.39
CDY28377	Canola	nucleus	18.2	31.4
CDY05340	Canola	nucleus	26.15	30.96
CDY20184	Canola	cytosol	18.55	30.88
CDY34235	Canola	endoplasmic reticulum, extracellular, vacuole	12.54	24.83
CDY64242	Canola	nucleus	8.83	18.94
CDY54822	Canola	cytosol, plastid	16.43	16.94
CDY67857	Canola	nucleus, plastid	17.84	16.72
CDX79489	Canola	cytosol	9.54	16.72
CDY64240	Canola	cytosol, plastid	17.31	16.44
CDY10668	Canola	nucleus, plastid	16.08	15.85
CDY42785	Canola	nucleus, plastid	18.2	15.68
CDY29770	Canola	nucleus, plastid	17.84	15.61
CDY54821	Canola	nucleus	18.02	15.02
CDX74164	Canola	nucleus	13.78	14.94
CDY40681	Canola	mitochondrion, plasma membrane, plastid, vacuole	13.43	14.0
CDY10669	Canola	nucleus	17.49	13.24
CDX92957	Canola	nucleus, plastid	18.2	8.47
CDX94892	Canola	nucleus, plastid	18.55	8.46

Protein Annotations

EnsemblPlants:CDX97461	EnsemblPlantsGene:GSBRNA2T00104633001	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF14	PFAM:PF03638	PFscan:PS51634	ProteinID:CDX97461	ProteinID:CDX97461.1
SEG:seg	SMART:SM01114	UniParc:UPI0004EEA78A	MapMan:15.5.9	:	:

Description

BnaC08g13260D

Coordinates

chrLK031899:+:861946..864655

Molecular Weight (calculated)

60367.3 Da

IEP (calculated)

7.488

GRAVY (calculated)

-0.639

Length

566 amino acids

Sequence
(BLAST)

001: MGEGGGGGGD FPPKKDGVSD ESCFPAKKPA TQLDFTGGSD EHSESHTVVT PSVTSPVTTT PSRLHPVARP TLPVVTSQSQ ILNAPISLPK QPESPESRAR
101: PPIVEGRDGT PQKKKHCNCK LSRCLKLYCE CFASGTYCDG CNCVNCFNNA DNEPARRDAV EATLDRNPNA FRPKIASSPH GARDKREEIG EAVLLGKHNK
201: GCHCKKSGCL KKYCECFQAN VLCSENCRCL GCKNFDGSEE RQALFHGEHA SNMAYLQQAA NAAITGAVGS SGFAPFPAPK RRKGQDISFN QATNDSSMHR
301: LGQFQQASNG RTSGSTSGTS PANVARASGN SSAPSKFVYR SLLAEIIQPQ DVNALCSVLV AVAGEAAKTS TDRRNETEKR VEDQTETSLA SCNSQGNKDA
401: SDVEMIATDG NQADGSNGRP LSPATLALMC DEQDSLFMVA AAEPSGSVDT GGCGTNPQGQ SETYAEKERL VLTKFRDCLT RLISYADFKE SKCSYLARSH
501: IQSPSTAPTV TVKTENGIQQ RPPVVNGASL TTTQPTLNKP QLLQPTTTTS THHPHKPPAP EENKDL

Best Arabidopsis Sequence Match ( AT4G29000.1 )
(BLAST)

001: MGEDGGGGEF PPKKDGVEEG FPTKKPARQL DFTGGSDEHS LSKPAAPTVV ATSVKPIISS SVPSTIRPGM TIAIGQVTQV RPTLPMATTM SNPPSQSQIV
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP

Arabidopsis Description

TCX5Protein tesmin/TSO1-like CXC 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.