Factsheet for PGSC0003DMT400000824

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g007180.1.1	Tomato	nucleus	85.25	83.53
VIT_11s0016g03680.t01	Wine grape	nucleus, plastid	65.37	60.88
CDY71540	Canola	nucleus, plastid	30.74	56.6
CDY67603	Canola	cytosol	32.99	56.1
KRH39300	Soybean	nucleus	63.73	55.64
KRH41552	Soybean	nucleus	62.09	54.99
KRH48373	Soybean	nucleus	63.32	54.98
KRH60264	Soybean	nucleus	62.5	54.37
CDY05722	Canola	nucleus	50.0	49.29
Bra041042.1-P	Field mustard	nucleus	50.61	49.11
CDY31991	Canola	nucleus	50.61	48.81
GSMUA_Achr9P06330_001	Banana	cytosol	50.2	48.42
GSMUA_Achr2P09150_001	Banana	cytosol	48.57	45.4
AT4G29000.1	Thale cress	nucleus	55.53	44.94
AT2G20110.2	Thale cress	nucleus	53.07	44.81
CDY35239	Canola	nucleus	53.48	44.77
Bra011075.1-P	Field mustard	nucleus	47.34	43.75
CDX97461	Canola	nucleus	50.2	43.29
CDX92907	Canola	nucleus	49.39	43.19
GSMUA_Achr6P26760_001	Banana	nucleus	49.18	43.09
Bra024171.1-P	Field mustard	nucleus	48.57	42.93
CDY66476	Canola	nucleus	50.2	42.76
Bra010348.1-P	Field mustard	nucleus	50.2	42.68
Os01t0761100-01	Rice	cytosol, nucleus, plastid	50.41	39.74
GSMUA_Achr3P31550_001	Banana	nucleus	46.52	38.8
TraesCS3A01G304800.1	Wheat	plastid	48.36	38.37
TraesCS3B01G331700.1	Wheat	plastid	48.36	38.37
Zm00001d012688_P001	Maize	nucleus	48.16	38.27
TraesCS3D01G297000.1	Wheat	plastid	48.16	38.21
HORVU3Hr1G073470.1	Barley	cytosol, nucleus, plastid	47.54	37.91
KXG33424	Sorghum	nucleus	47.34	37.68
Zm00001d043378_P001	Maize	nucleus	45.9	36.66
CDY06853	Canola	cytosol, nucleus, plastid	53.89	18.68
PGSC0003DMT400082098	Potato	nucleus	20.08	11.86
PGSC0003DMT400059571	Potato	nucleus, plastid	16.6	9.09

Protein Annotations

EnsemblPlants:PGSC0003DMT400000824	EnsemblPlantsGene:PGSC0003DMG401000306	InterPro:CRC	InterPro:IPR005172	InterPro:Lin-54_fam	InterPro:Tesmin/TSO1-like_CXC
PANTHER:PTHR12446	PANTHER:PTHR12446:SF14	PFAM:PF03638	PFscan:PS51634	PGSC:PGSC0003DMG401000306	SEG:seg
SMART:SM01114	UniParc:UPI000295EC4B	UniProt:M0ZHE0	MapMan:15.5.9	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG401000306]

Coordinates

chr12:+:4402351..4409958

Molecular Weight (calculated)

53306.3 Da

IEP (calculated)

7.818

GRAVY (calculated)

-0.594

Length

488 amino acids

Sequence
(BLAST)

001: MTTSGTQIVP VKLTPVQRPQ LQPPPQPQQH IVLMPMKQTA VPPNHPSIRP PKPESPRARP RQSASEVKDG TPKKQKQCNC KHSRCLKLYC ECFASGVYCD
101: GCNCNNCHNN VENEPARREA VEATLERNPH AFRPKIASSP HGARDNKEET GDGLVLAKHN KGCHCKKSGC LKKYCECFQA NILCSENCKC MDCKNFEGSE
201: ERQALFHGDH ANNMAYLQQA ANAAITGAIG SSGYGSPPVN RKRKSQELFF ASTIKDPVHR HGQLQQGNHI KSSVLPSLSS SPGPCVGNAT TVGPSKFTYR
301: SLLEDLIQPQ DLKELCSVLV VYSGEAAKML ADEKDASKKQ AEGQTEASLA SSTQERVQNQ KDSGSEKDML DCCSSGDQGE KISMEESSLD GADVSKRRPM
401: SPGTLALMCD ESDTMFAAAI TSPNDLATLG CNTSSQLPHG QGMTETYAEQ ERIVLTKFRD CLNRLVTLGE IKGNFFSFLF CLNLVLIH

Best Arabidopsis Sequence Match ( AT4G29000.1 )
(BLAST)

001: MGEDGGGGEF PPKKDGVEEG FPTKKPARQL DFTGGSDEHS LSKPAAPTVV ATSVKPIISS SVPSTIRPGM TIAIGQVTQV RPTLPMATTM SNPPSQSQIV
101: NAPIRHPIPE SPKARGPRPN VEGRDGTPQK KKQCNCKHSR CLKLYCECFA SGTYCDGCNC VNCFNNVDNE PARREAVEAT LERNPFAFRP KIASSPHGGR
201: DKREDIGEVV LLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NFEGSEERQA LFHGEHSNHM AYLQQAANAA ITGAVGSSGF APSPAPKRRK
301: GQEILFNQAI KDSSRLSHFP QVNNGRTGGP TSGTSPSPVS RAGGNASSVP SKFVYRSLLA DIIQPHDVRA LCSVLVTVAG EAAKTSTDKR NEIENRVDDQ
401: TETSLASSAQ DQPQGNNNAA DVEMVATDHN QADKSGPEES NSDGVDASKV TPLSPATLAL MCDEQDTIFM VAAPSPNGSV DPNGCRPNSQ GQSEIYAEQE
501: RLVLTKFRDC LNRLISYAEI KESKCLSLAR MHIQPPAIAT VKTENGIQQQ VPIVNGASRT NCQPTLNKPQ PMQLMNTTSA APATATNTQH LQKPPALSEK
601: KDP

Arabidopsis Description

TCX5Protein tesmin/TSO1-like CXC 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.