CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21661	Canola	nucleus	97.52	93.28
CDY29763	Canola	endoplasmic reticulum	63.64	91.39
CDY03358	Canola	nucleus	94.63	90.87
CDY48711	Canola	nucleus	94.01	90.46
AT2G19520.1	Thale cress	nucleus	92.77	88.56
CDY35867	Canola	cytosol	50.83	86.62
CDX82696	Canola	nucleus	74.17	81.59
CDY70287	Canola	nucleus	30.58	80.87
GSMUA_Achr4P08720_001	Banana	cytosol	66.12	78.62
EES01357	Sorghum	nucleus	73.14	78.15
KRH12388	Soybean	nucleus	80.99	77.17
KRH37388	Soybean	nucleus	81.2	76.61
Os01t0710000-01	Rice	nucleus	71.69	76.6
CDY06779	Canola	nucleus	75.83	75.67
TraesCS3B01G280400.1	Wheat	nucleus	73.14	75.16
TraesCS3A01G250900.2	Wheat	cytosol	73.14	75.16
TraesCS3D01G251300.2	Wheat	nucleus	72.93	74.95
CDY43523	Canola	nucleus	73.35	74.74
Zm00001d052871_P001	Maize	cytosol	4.55	73.33
VIT_11s0016g02170.t01	Wine grape	nucleus	74.79	71.26
HORVU3Hr1G066930.1	Barley	plastid	73.76	70.14
Zm00001d043683_P001	Maize	cytosol	29.75	69.9
Solyc07g039330.2.1	Tomato	nucleus	54.13	69.5
Zm00001d011705_P002	Maize	cytosol	71.28	66.35
GSMUA_Achr3P32330_001	Banana	cytosol	24.38	65.56
Zm00001d043682_P002	Maize	cytosol, plastid	71.07	65.03
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	28.72	60.43
GSMUA_Achr7P09120_001	Banana	nucleus	55.37	58.9
GSMUA_Achr7P24160_001	Banana	nucleus	29.13	58.75
Zm00001d050047_P001	Maize	nucleus	22.52	39.49
CDY43875	Canola	nucleus	29.13	33.1
CDY62688	Canola	nucleus	28.93	32.86
CDY02805	Canola	nucleus	27.89	32.22
CDY47479	Canola	cytosol	27.48	32.13
CDY26787	Canola	cytosol	27.27	31.88
CDY32715	Canola	nucleus	27.27	31.73
CDY70131	Canola	cytosol	12.19	28.23
CDY03357	Canola	plastid	22.73	23.26
CDY48712	Canola	plastid	22.52	23.14
CDY21659	Canola	nucleus	22.52	23.04
CDX81935	Canola	nucleus	22.52	22.95
CDY58569	Canola	cytosol	29.13	22.17
CDX88663	Canola	nucleus	29.13	22.17
CDY43325	Canola	cytosol	14.05	21.45
CDX90175	Canola	cytosol	14.05	21.45
CDY50786	Canola	cytosol	13.84	21.14
CDX99799	Canola	cytosol	13.84	21.14
CDX82701	Canola	nucleus	16.94	21.13
CDY35872	Canola	cytosol, nucleus, plastid	14.46	20.59

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	EnsemblPlants:CDX81933	ProteinID:CDX81933	ProteinID:CDX81933.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00136896001	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFAM:PF12265	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850
PANTHER:PTHR22850:SF184	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EF4456	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC08g36680D

Coordinates

chrLK031826:+:1551560..1554808

Molecular Weight (calculated)

53136.8 Da

IEP (calculated)

5.683

GRAVY (calculated)

-0.540

Length

484 amino acids

Sequence
(BLAST)

001: MESDGAAAAG AASPSGGNQE ERGGKMKESG KKTKQGEQSV DEKYTQWKGL VPILYDWLAN HNLVWPSLSC RWGPQIEQAT YKNRQRLYLS EQTDGSVPNT
101: LVIANCEVVK PRVAAAEHIS QFNEEARSPF VKKFKTIIHP GEVNRIRELP QNSKIIATHT DSPDVLIWDV ETQPNRHAVL GAAHSRPDLV LTGHQDNAEF
201: ALAMCPTEPF VLSGGKDKSV VLWSIQDHIT TAGSTDSKSS GSIIKQTGEG GDKTESPSLG PRGVYHGHDD TVEDVAFSPT SAQEFCSVGD DSCLILWDAR
301: TGTSPVTKVE KAHDADLHCV DWNPHDDNLI LTGSADNTVR LYDRRKLTSN GVGTPIYKFE GHKAAVLCVQ WSPDKSSVFG SSAEDGLLNI WDYDRVSKKS
401: DRAAKSPAGL FFQHAGHRDK VVDFHWNAED PWTIVSVSDD CETTGGGGTL QIWRMSDLIY RPEEEVLAEL EKFKSHVMTC ASKP

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.