Skip to main content
crop-pal logo
Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d011705_P002 Maize cytosol 100.0 5.77
Zm00001d043682_P002 Maize cytosol, plastid 93.33 5.29
Zm00001d033252_P001 Maize cytosol, nucleus, plastid 20.0 5.13
VIT_09s0002g02150.t01 Wine grape nucleus 76.67 5.08
CDY43523 Canola nucleus 73.33 4.63
Bra011133.1-P Field mustard nucleus 73.33 4.62
CDX81933 Canola nucleus 73.33 4.55
KRH12388 Soybean nucleus 76.67 4.53
KRH37388 Soybean nucleus 76.67 4.48
Bra040678.1-P Field mustard nucleus 73.33 4.43
Bra036717.1-P Field mustard nucleus 70.0 4.38
Bra031085.1-P Field mustard nucleus 73.33 4.37
CDY21661 Canola nucleus 73.33 4.35
CDY06779 Canola nucleus 70.0 4.33
AT4G29730.1 Thale cress nucleus 70.0 4.31
Solyc07g039330.2.1 Tomato nucleus 53.33 4.24
CDY48711 Canola nucleus 70.0 4.17
CDY03358 Canola nucleus 70.0 4.17
AT2G19520.1 Thale cress nucleus 70.0 4.14
Solyc03g121580.2.1 Tomato nucleus 63.33 4.13
VIT_11s0016g02170.t01 Wine grape nucleus 63.33 3.74
GSMUA_Achr7P09120_001 Banana nucleus 53.33 3.52
KRH23320 Soybean endoplasmic reticulum 53.33 3.49
KRH10009 Soybean cytosol, mitochondrion, nucleus 40.0 3.04
Zm00001d033247_P001 Maize nucleus 20.0 1.39
Zm00001d033248_P002 Maize cytoskeleton, cytosol, nucleus 20.0 1.39
Zm00001d013702_P001 Maize nucleus 16.67 1.16
CDY35867 Canola cytosol 10.0 1.06
Zm00001d022614_P001 Maize cytosol 10.0 0.74
CDX82696 Canola nucleus 6.67 0.45
Zm00001d053451_P001 Maize cytosol, nucleus, plastid 3.33 0.43
Zm00001d044641_P004 Maize cytosol, mitochondrion, nucleus, plastid 3.33 0.21
Zm00001d010850_P003 Maize plasma membrane 3.33 0.21
PGSC0003DMT400006393 Potato nucleus 0.0 0.0
CDY70287 Canola nucleus 0.0 0.0
Zm00001d016170_P001 Maize cytosol 0.0 0.0
CDY29763 Canola endoplasmic reticulum 0.0 0.0
Zm00001d043683_P001 Maize cytosol 0.0 0.0
Zm00001d050047_P001 Maize nucleus 0.0 0.0
Protein Annotations
EnsemblPlants:Zm00001d052871_P001EnsemblPlants:Zm00001d052871_T001EnsemblPlantsGene:Zm00001d052871ProteinID:AQK58263.1ProteinID:AQK97795.1UniParc:UPI000843D926
UniProt:A0A1D6G370MapMan:35.2::::
Description
WD-40 repeat-containing protein MSI5
Coordinates
chr4:+:203084837..203085460
Molecular Weight (calculated)
3405.0 Da
IEP (calculated)
4.383
GRAVY (calculated)
-0.377
Length
30 amino acids
Sequence
(BLAST)
1: MSDLIYRPED EVLAELENFK AHLASCAPKN
Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)
001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP
Arabidopsis Description
MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.