CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43523	Canola	nucleus	92.99	94.95
CDY29763	Canola	endoplasmic reticulum	55.88	80.42
AT4G29730.1	Thale cress	nucleus	77.94	77.62
CDX81933	Canola	nucleus	75.67	75.83
CDY48711	Canola	nucleus	75.88	73.16
CDY03358	Canola	nucleus	75.88	73.02
CDY21661	Canola	nucleus	76.08	72.92
CDY35867	Canola	cytosol	42.47	72.54
GSMUA_Achr4P08720_001	Banana	cytosol	60.82	72.48
KRH12388	Soybean	nucleus	73.4	70.08
Zm00001d052871_P001	Maize	cytosol	4.33	70.0
EES01357	Sorghum	nucleus	65.36	69.98
KRH37388	Soybean	nucleus	73.4	69.4
Os01t0710000-01	Rice	nucleus	64.54	69.09
TraesCS3B01G280400.1	Wheat	nucleus	65.98	67.94
TraesCS3A01G250900.2	Wheat	cytosol	65.98	67.94
TraesCS3D01G251300.2	Wheat	nucleus	65.77	67.73
CDX82696	Canola	nucleus	61.24	67.5
Solyc07g039330.2.1	Tomato	nucleus	50.93	65.52
VIT_11s0016g02170.t01	Wine grape	nucleus	67.42	64.37
HORVU3Hr1G066930.1	Barley	plastid	67.42	64.24
CDY70287	Canola	nucleus	22.89	60.66
Zm00001d011705_P002	Maize	cytosol	63.3	59.04
GSMUA_Achr7P24160_001	Banana	nucleus	29.07	58.75
Zm00001d043682_P002	Maize	cytosol, plastid	63.92	58.6
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	27.63	58.26
Zm00001d043683_P001	Maize	cytosol	24.74	58.25
GSMUA_Achr7P09120_001	Banana	nucleus	52.78	56.26
GSMUA_Achr3P32330_001	Banana	cytosol	20.21	54.44
Zm00001d050047_P001	Maize	nucleus	21.65	38.04
CDY47479	Canola	cytosol	27.84	32.61
CDY26787	Canola	cytosol	27.84	32.61
CDY62688	Canola	nucleus	27.84	31.69
CDY43875	Canola	nucleus	27.84	31.69
CDY32715	Canola	nucleus	26.6	31.01
CDY02805	Canola	nucleus	26.6	30.79
CDY70131	Canola	cytosol	11.75	27.27
CDY48712	Canola	plastid	21.86	22.51
CDY03357	Canola	plastid	21.86	22.41
CDX81935	Canola	nucleus	21.86	22.32
CDY21659	Canola	nucleus	21.65	22.2
CDY43325	Canola	cytosol	14.23	21.77
CDX90175	Canola	cytosol	14.23	21.77
CDY35872	Canola	cytosol, nucleus, plastid	15.05	21.47
CDX99799	Canola	cytosol	14.02	21.45
CDY50786	Canola	cytosol	14.02	21.45
CDX88663	Canola	nucleus	28.04	21.38
CDY58569	Canola	cytosol	28.04	21.38
CDX82701	Canola	nucleus	16.29	20.36

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	EnsemblPlants:CDY06779	ProteinID:CDY06779	ProteinID:CDY06779.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00123012001	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFAM:PF12265	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850
PANTHER:PTHR22850:SF184	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE9F12	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC01g08780D

Coordinates

chrLK031973:+:199554..202926

Molecular Weight (calculated)

53333.5 Da

IEP (calculated)

6.751

GRAVY (calculated)

-0.512

Length

485 amino acids

Sequence
(BLAST)

001: MESEVAAKAR REAETPATYI GLKTRAQRAK LSNGSVSASS HQPRSTEKKK KKSHKPTVDN KYSQWKTLVP ILYDSLSNQS LVWPCLSCRW GPQFEQALAK
101: NQQRLYLTEQ TDGSVPNTLV VANCEAVKKQ LNGEACSPFV KKYKTIIHPG EVNRIRELPQ NSKIVATHTD SPDVLIWDTE TQPDRHAVLG APHSRPDLIL
201: TGHQDNAEFA LAMFPTEPFV LSGGKDKSVV LWSIQDHITT AGTDSKSPGS SIKQTGGRSV GPRGVYHGHE DTVEDVAFCP SSAQEFCSVG DDSCLILWDA
301: RTGTGPAMKV EKAHDADLHC VDWNPHDNNL ILTGSADNTV RLFDCRNLTS NGVGSPIYKF EGHNASVLSV QWSPDKSSVF GSAAEDGLLN IWDYDKVGKK
401: SARAPKSPPG LLFQHAGHRD NMVDFHWNVL EPWTIVSVSG NCESNGGGGT LQIWRMSELI YRPEDEVLAE LEDFKSQVFS CASRP

Best Arabidopsis Sequence Match ( AT4G29730.1 )
(BLAST)

001: MESEAAATVQ ATRPRRAPRT PVTAILTDKR RRKPKSNNES QLPFLLQQSQ KATVDDTYSQ WKTLLPILYD SFVNHTLVWP SLSCRWGPQL EQAGSKTQRL
101: YLSEQTNGSV PNTLVIANCE TVNRQLNEKA HSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDIL IWNTETQPDR YAVLGAPDSR PDLLLIGHQD
201: DAEFALAMCP TEPFVLSGGK DKSVILWNIQ DHITMAGSDS KSPGSSFKQT GEGSDKTGGP SVGPRGIYNG HKDTVEDVAF CPSSAQEFCS VGDDSCLMLW
301: DARTGTSPAM KVEKAHDADL HCVDWNPHDN NLILTGSADN TVRVFDRRNL TSNGVGSPVY KFEGHRAAVL CVQWSPDKSS VFGSSAEDGL LNIWDCDRVG
401: KKSERATKTP DGLFFQHAGH RDKVVDFHWS LLNPWTIVSV SDNCESIGGG GTLQIWRMSD LIYRPEDEVL TELEKFKSHV FTCTSKS

Arabidopsis Description

MSI5WD-40 repeat-containing protein MSI5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU78]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.