Factsheet for Zm00001d011705_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052871_P001	Maize	cytosol	5.77	100.0
EES01357	Sorghum	nucleus	82.31	94.48
Os01t0710000-01	Rice	nucleus	77.88	89.4
TraesCS3B01G280400.1	Wheat	nucleus	78.65	86.84
TraesCS3D01G251300.2	Wheat	nucleus	78.46	86.62
TraesCS3A01G250900.2	Wheat	cytosol	78.46	86.62
HORVU3Hr1G066930.1	Barley	plastid	78.46	80.16
Zm00001d043682_P002	Maize	cytosol, plastid	80.96	79.58
Zm00001d043683_P001	Maize	cytosol	30.96	78.16
VIT_09s0002g02150.t01	Wine grape	nucleus	67.88	77.92
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	34.23	77.39
PGSC0003DMT400006393	Potato	nucleus	50.0	75.14
Solyc03g121580.2.1	Tomato	nucleus	65.77	74.35
CDY29763	Canola	endoplasmic reticulum	47.12	72.7
KRH23320	Soybean	endoplasmic reticulum	63.85	72.33
CDX81933	Canola	nucleus	66.35	71.28
Bra040678.1-P	Field mustard	nucleus	66.54	69.62
KRH12388	Soybean	nucleus	67.31	68.9
CDY48711	Canola	nucleus	66.54	68.79
Bra031085.1-P	Field mustard	nucleus	66.35	68.45
CDY03358	Canola	nucleus	66.15	68.25
AT2G19520.1	Thale cress	nucleus	66.54	68.24
KRH37388	Soybean	nucleus	67.31	68.23
CDY21661	Canola	nucleus	66.35	68.18
Bra036717.1-P	Field mustard	nucleus	62.31	67.5
Solyc07g039330.2.1	Tomato	nucleus	48.27	66.58
VIT_11s0016g02170.t01	Wine grape	nucleus	64.04	65.55
CDY35867	Canola	cytosol	35.38	64.79
CDY43523	Canola	nucleus	58.27	63.79
Bra011133.1-P	Field mustard	nucleus	58.27	63.66
CDY06779	Canola	nucleus	59.04	63.3
AT4G29730.1	Thale cress	nucleus	58.85	62.83
CDX82696	Canola	nucleus	52.12	61.59
KRH10009	Soybean	cytosol, mitochondrion, nucleus	45.96	60.51
CDY70287	Canola	nucleus	21.15	60.11
Zm00001d050047_P001	Maize	nucleus	25.96	48.91
Zm00001d033248_P002	Maize	cytoskeleton, cytosol, nucleus	25.96	31.32
Zm00001d033247_P001	Maize	nucleus	25.58	30.86
Zm00001d033252_P001	Maize	cytosol, nucleus, plastid	6.92	30.77
Zm00001d013702_P001	Maize	nucleus	25.38	30.63
Zm00001d022614_P001	Maize	cytosol	23.65	30.52
Zm00001d044641_P004	Maize	cytosol, mitochondrion, nucleus, plastid	20.77	22.59
Zm00001d010850_P003	Maize	plasma membrane	20.77	22.45
Zm00001d016170_P001	Maize	cytosol	13.65	22.26

Protein Annotations

MapMan:12.2.1.3	EntrezGene:541934	UniProt:A0A1D6G362	ProteinID:AQK97801.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0016020	GO:GO:0016021	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR017986	PFAM:PF00400
PFAM:PF12265	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF85
SMART:SM00320	SUPFAM:SSF50978	TMHMM:TMhelix	UniParc:UPI000843A7EE	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d011705	EnsemblPlants:Zm00001d011705_P002	EnsemblPlants:Zm00001d011705_T002	SEG:seg	:

Description

WD-40 repeat-containing protein MSI4

Coordinates

chr8:+:159247251..159252702

Molecular Weight (calculated)

57053.6 Da

IEP (calculated)

6.649

GRAVY (calculated)

-0.184

Length

520 amino acids

Sequence
(BLAST)

001: MKERSGSRAA VDERYAQWKS LIPVLYDWFA NHNLVWPSLS CRKMPCSLHH VTLQLMMLIS GCLLTGGGHS LRKLPTRIVS ACTYLNRQVH LQTDGSVPNT
101: LVIANCEVVK PRVAAAEHIS QFNEEARSPF VKKYKTIVHP GEVNRIRELP QNSKIIATHT DSPDVLIWDV EAQPNRHAVL GASESRPDLI LTGHKENAEF
201: ALAMCPAEPY VLSGGKDKSV VLWSIQDHIS ALGDSSSSPG ASGSKQSIKT ANEKESPKVD PRGIFHGHDS TVEDVQFCPS SAQEFCSVGD DACLILWDAR
301: TGTAPAVKVE KAHSGDVHCV DWNPLDVNYI LTGSADNSVR MWDRRNLGSG GAGSPIHKFE GHKAAVLCVQ ACQDNIFAVI FSLCGCGCFL CCFFIPLFFA
401: IILSFGFQWS PDRASVFGSS AEDGFLNVWD HEKVGKKKNS NVPAGLFFQH AGHRDKIVDF HWNSSDPWTI VSVSDDGEST GGGGTLQIWR MSDLIYRPED
501: EVLAELENFK AHLASCAPKN

Best Arabidopsis Sequence Match ( AT2G16780.1 )
(BLAST)

001: MADEGKEETG MGQVEEDFSV WKKNTPFLYD LLISHPLEWP SLTVHWVPST PNPYVADSYF GVHKLILGTH TSGSAQDFLM VADVVTPTPN AEPGIGGANQ
101: DPFIPKVEIR QRIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EEDAEDIKED ITQQS

Arabidopsis Description

MSI2WD-40 repeat-containing protein MSI2 [Source:UniProtKB/Swiss-Prot;Acc:O22468]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.