CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g02150.t01	Wine grape	nucleus	78.65	79.69
Solyc03g121580.2.1	Tomato	nucleus	77.56	77.39
PGSC0003DMT400006393	Potato	nucleus	58.17	77.17
KRH10009	Soybean	cytosol, mitochondrion, nucleus	66.01	76.71
GSMUA_Achr4P08720_001	Banana	cytosol	67.1	75.68
EES01357	Sorghum	nucleus	73.86	74.83
Os01t0710000-01	Rice	nucleus	73.2	74.17
TraesCS3A01G250900.2	Wheat	cytosol	73.42	71.55
TraesCS3B01G280400.1	Wheat	nucleus	73.42	71.55
TraesCS3D01G251300.2	Wheat	nucleus	73.2	71.34
KRH12388	Soybean	nucleus	78.87	71.26
KRH37388	Soybean	nucleus	78.87	70.57
Zm00001d043683_P001	Maize	cytosol	31.15	69.42
HORVU3Hr1G066930.1	Barley	plastid	73.42	66.21
GSMUA_Achr3P32330_001	Banana	cytosol	25.27	64.44
Zm00001d011705_P002	Maize	cytosol	72.33	63.85
Zm00001d043682_P002	Maize	cytosol, plastid	71.46	62.0
GSMUA_Achr7P24160_001	Banana	nucleus	31.81	60.83
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	28.98	57.83
GSMUA_Achr7P09120_001	Banana	nucleus	56.21	56.7
Zm00001d052871_P001	Maize	cytosol	3.49	53.33
Zm00001d050047_P001	Maize	nucleus	22.22	36.96
KRH24317	Soybean	nucleus	27.45	31.42
KRH29002	Soybean	nucleus	27.23	31.02
KRH58491	Soybean	nucleus	28.32	30.59
KRH42369	Soybean	nucleus	28.32	30.59
KRH58776	Soybean	nucleus	23.31	22.62
KRH21268	Soybean	cytosol	14.81	21.38
KRH42676	Soybean	nucleus	22.66	21.05
KRH11018	Soybean	cytosol	13.94	20.78

Protein Annotations

EntrezGene:100786023	MapMan:12.2.1.3	Gene3D:2.130.10.10	UniProt:A0A0R0H7S6	EMBL:ACUP02008461	EnsemblPlantsGene:GLYMA_13G350500
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH23320
ProteinID:KRH23320	ProteinID:KRH23320.1	PFAM:PF00400	PFAM:PF12265	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22850	PANTHER:PTHR22850:SF85	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00023CF08E	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:43996321..44001308

Molecular Weight (calculated)

51238.9 Da

IEP (calculated)

5.955

GRAVY (calculated)

-0.435

Length

459 amino acids

Sequence
(BLAST)

001: MKEKEKVEER YTQWKSLVPV LYDWLANHNL VWPSLSCRWG PQLEQATYKN RHRLYLSEQT DGSVPNTLVI ANCEVVKPRV AAAEHISQFN EEARSPFVKK
101: HKTILHPGEV TYFFQVNRIR EFQQNNKIVA THTDSPEVLI WDVETQPNRH AVLGATTSRP DLVLTGHKDN AEFALAMCPT EPFVLSGGKD KCVVLWSVHD
201: HISTLAVETA SNVKQGSKTG GNNTKATESP CIEPRGIYQG HEDTVEDVQF CPSSALEFCS VGDDSRLILW DARVGSAPVV KVDKAHNGDL HCVDWSPHDI
301: NFILTGSADN TIHMFDRRNL TSSGVGSPVY KFEGHDAAVL CVQWSPDKSS VFGSTAEDGI LNIWDHDKVG KTTDSADSKA SNAPPGLFFR HAGHRDKVVD
401: FHWNASDPWT IVSVSDDCES SGGGGTLQIW RMMDLIYRPE EEVLTELDKF RSHIFGCNS

Best Arabidopsis Sequence Match ( AT2G16780.1 )
(BLAST)

001: MADEGKEETG MGQVEEDFSV WKKNTPFLYD LLISHPLEWP SLTVHWVPST PNPYVADSYF GVHKLILGTH TSGSAQDFLM VADVVTPTPN AEPGIGGANQ
101: DPFIPKVEIR QRIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EEDAEDIKED ITQQS

Arabidopsis Description

MSI2WD-40 repeat-containing protein MSI2 [Source:UniProtKB/Swiss-Prot;Acc:O22468]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.