CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58776	Soybean	nucleus	92.71	96.83
VIT_11s0016g02270.t01	Wine grape	nucleus	78.54	81.86
Os12t0132400-01	Rice	nucleus	23.48	75.82
PGSC0003DMT400034220	Potato	nucleus	71.86	75.69
Solyc07g039200.2.1	Tomato	nucleus	69.43	74.24
PGSC0003DMT400065692	Potato	cytoskeleton, cytosol, nucleus	45.34	73.44
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	69.43	73.13
GSMUA_Achr8P09420_001	Banana	cytosol, nucleus, plastid	69.03	72.86
CDY48712	Canola	plastid	69.03	72.4
CDY03357	Canola	plastid	69.23	72.3
Bra040681.1-P	Field mustard	cytosol	52.23	71.27
CDY21659	Canola	nucleus	68.22	71.25
CDX81935	Canola	nucleus	68.22	70.95
Bra031087.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	38.87	70.85
Solyc05g014090.1.1	Tomato	mitochondrion	55.06	68.51
Solyc05g018780.1.1	Tomato	cytosol, mitochondrion, nucleus	52.23	68.07
Os11t0134500-01	Rice	nucleus	63.77	67.74
Solyc05g025630.1.1	Tomato	cytosol, mitochondrion, nucleus	63.36	67.6
TraesCS4D01G126000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	65.38	67.01
TraesCS4B01G131200.1	Wheat	nucleus	65.38	67.01
TraesCS4A01G187400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	65.38	67.01
EES15567	Sorghum	cytosol, mitochondrion, nucleus, plastid	64.78	66.81
HORVU4Hr1G026330.2	Barley	cytosol, mitochondrion, nucleus, plastid	65.18	66.81
Zm00001d010850_P003	Maize	plasma membrane	64.78	66.53
CDX82701	Canola	nucleus	52.02	66.24
Zm00001d044641_P004	Maize	cytosol, mitochondrion, nucleus, plastid	63.77	65.9
CDY35872	Canola	cytosol, nucleus, plastid	44.74	65.0
TraesCS5A01G139800.1	Wheat	mitochondrion, plastid	62.15	63.56
TraesCS5B01G137200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	61.94	63.35
OQU82815	Sorghum	mitochondrion	58.7	63.18
KRH58491	Soybean	nucleus	22.47	26.12
KRH42369	Soybean	nucleus	22.47	26.12
KRH29002	Soybean	nucleus	21.05	25.81
KRH24317	Soybean	nucleus	20.85	25.69
KRH23320	Soybean	endoplasmic reticulum	21.05	22.66
KRH12388	Soybean	nucleus	22.27	21.65
KRH37388	Soybean	nucleus	22.27	21.44
KRH10009	Soybean	cytosol, mitochondrion, nucleus	16.6	20.76
KRH11018	Soybean	cytosol	12.75	20.45
KRH21268	Soybean	cytosol	13.16	20.44
Os12t0132300-02	Rice	cytosol	0.81	2.19
Os11t0134400-00	Rice	cytosol	0.81	2.19

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02004822	EnsemblPlantsGene:GLYMA_08G104700	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Histone-bd_RBBP4_N
UniProt:I1KS25	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH42676	ProteinID:KRH42676
ProteinID:KRH42676.1	PFAM:PF00400	PFAM:PF12265	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850
PANTHER:PTHR22850:SF6	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00023C63DD	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:8054121..8058941

Molecular Weight (calculated)

54420.3 Da

IEP (calculated)

4.708

GRAVY (calculated)

-0.477

Length

494 amino acids

Sequence
(BLAST)

001: MTRGIKHRQK AKSKKKGSKK EGGSSSSLAP EIPAKVWQPG VDKLEEGEEL QCDPSAYNSL HAFHIGWPCL SFDILRDSLG LVRTEFPHTV YFMAGTQAEK
101: PSWNSIGIFK VSNITGKRRE PVPKLGTDDT EMDGEDSDSD DDSEEEDEGG AQGPSLQETS SSFEFLLFDL LTASNLILRK VAHQGCVNRI RSMPQNPHIC
201: AAWADTGHVQ VWDLNSHLNV LAETETEGVQ GVAAVFNQDP LYKFKHKDEG YAIDWSPLVP GKLASGDCNN CIYLWEPTSA GTWNVDNAPF IGHTASVEDL
301: QWSPTESHVF ASCSVDGNIA IWDTRLGKSP AASFKAHNAD VNVMSWNRLA SCMLASGSDD GTISIRDLRL LKEGDSVVAH FEYHKHPITS IEWSPHEASS
401: LAVSSSDNQL TIWDLSLEKD EEEEAEFKAK TKEQVNAPED LPPQLLFIHQ GQKDLKELHW HTQIPGMIVS TAEDGFNVLM PSNIQSTLPS NGAL

Best Arabidopsis Sequence Match ( AT2G19540.1 )
(BLAST)

001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA

Arabidopsis Description

Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.