CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010850_P003	Maize	plasma membrane	95.62	95.22
Zm00001d044641_P004	Maize	cytosol, mitochondrion, nucleus, plastid	94.36	94.56
OQU82815	Sorghum	mitochondrion	82.67	86.27
Os11t0134500-01	Rice	nucleus	81.0	83.44
Os12t0132400-01	Rice	nucleus	26.51	83.01
TraesCS4B01G131200.1	Wheat	nucleus	82.67	82.16
TraesCS4A01G187400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	82.67	82.16
TraesCS4D01G126000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	82.25	81.74
HORVU4Hr1G026330.2	Barley	cytosol, mitochondrion, nucleus, plastid	82.05	81.54
TraesCS5B01G137200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	76.83	76.19
TraesCS5A01G139800.1	Wheat	mitochondrion, plastid	76.62	75.98
GSMUA_Achr8P09420_001	Banana	cytosol, nucleus, plastid	71.61	73.29
VIT_11s0016g02270.t01	Wine grape	nucleus	68.89	69.62
KRH58776	Soybean	nucleus	67.22	68.08
PGSC0003DMT400065692	Potato	cytoskeleton, cytosol, nucleus	43.01	67.54
PGSC0003DMT400034220	Potato	nucleus	65.34	66.74
Solyc07g039200.2.1	Tomato	nucleus	63.26	65.58
KRH42676	Soybean	nucleus	66.81	64.78
CDY48712	Canola	plastid	63.26	64.33
Bra031087.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	36.33	64.21
CDY03357	Canola	plastid	63.26	64.06
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	62.42	63.75
CDY21659	Canola	nucleus	62.42	63.21
CDX81935	Canola	nucleus	62.63	63.16
Solyc05g014090.1.1	Tomato	mitochondrion	50.73	61.21
Bra040681.1-P	Field mustard	cytosol	45.93	60.77
CDX82701	Canola	nucleus	48.43	59.79
Solyc05g018780.1.1	Tomato	cytosol, mitochondrion, nucleus	47.18	59.63
Solyc05g025630.1.1	Tomato	cytosol, mitochondrion, nucleus	57.41	59.4
CDY35872	Canola	cytosol, nucleus, plastid	40.92	57.65
EER97107	Sorghum	cytosol	21.29	25.31
EES01357	Sorghum	nucleus	22.76	24.06
EES04830	Sorghum	cytosol, peroxisome, plastid	15.03	22.43
OQU91278	Sorghum	cytosol, nucleus, plastid	22.34	17.6
Os12t0132300-02	Rice	cytosol	1.04	2.73
Os11t0134400-00	Rice	cytosol	1.04	2.73

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:8071423	UniProt:C5YQM2	EnsemblPlants:EES15567	ProteinID:EES15567
ProteinID:EES15567.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PFAM:PF12265	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF6
SMART:SM00320	EnsemblPlantsGene:SORBI_3008G016100	SUPFAM:SSF50978	unigene:Sbi.7275	UniParc:UPI0001A88400	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002441729.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:1331491..1335649

Molecular Weight (calculated)

52651.3 Da

IEP (calculated)

5.003

GRAVY (calculated)

-0.458

Length

479 amino acids

Sequence
(BLAST)

001: MGRTIKRAKK AKSKKAKKKT EASSSSNPAV ASGPAKVWQP GVDALEDGEE LQFDPEAYNY LRGFGIGWSC LSFDVVRDQL GLVRSEFPHT FYGVAGTQAE
101: KASWNYIGVF KLSNISGKKR EPIPASAVDG DTDVDSDSSS DEEDEEINED TKPILHLKKV AHAGCVNRIR SMTQKPHISA TWGDTGHVQV WDLSSFLNSL
201: AESGADAPKE DDIIHKHLPV KVFSGHKDEG YAIDWSPLVT GRLVSGDCNK CIHLWEPTSS NWNIDANPFV GHSASVEDLQ WSPTEADIFA SCSVDGTISI
301: WDIRTGKKPC ISVKAHKADV NVISWNRLAS CMIASGCDDG SFSVRDLRSI QEDSLVAHFE YHKKAITSIE WSPHEASSLA VTSEDHQLTI WDLSLERDAE
401: EEAEFRAKMK EQANAPEDLP PQLLFAHQGQ KDLKELHWHP QIPSMIISTA IDGFNVLMPS NIDTTIPGNT DTAMASAEP

Best Arabidopsis Sequence Match ( AT2G19540.1 )
(BLAST)

001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA

Arabidopsis Description

Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.