Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- cytosol 1
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G137200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 96.27 | 96.27 |
| EES15567 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 75.98 | 76.62 |
| TraesCS4A01G187400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 76.4 | 76.56 |
| Zm00001d044641_P004 | Maize | cytosol, mitochondrion, nucleus, plastid | 75.36 | 76.15 |
| Zm00001d010850_P003 | Maize | plasma membrane | 75.36 | 75.68 |
| OQU82815 | Sorghum | mitochondrion | 66.46 | 69.93 |
| GSMUA_Achr8P09420_001 | Banana | cytosol, nucleus, plastid | 66.87 | 69.02 |
| VIT_11s0016g02270.t01 | Wine grape | nucleus | 65.22 | 66.46 |
| PGSC0003DMT400065692 | Potato | cytoskeleton, cytosol, nucleus | 41.41 | 65.57 |
| KRH58776 | Soybean | nucleus | 63.56 | 64.9 |
| PGSC0003DMT400034220 | Potato | nucleus | 62.53 | 64.39 |
| Solyc07g039200.2.1 | Tomato | nucleus | 61.28 | 64.07 |
| KRH42676 | Soybean | nucleus | 63.56 | 62.15 |
| CDY48712 | Canola | plastid | 59.83 | 61.36 |
| CDY03357 | Canola | plastid | 60.04 | 61.31 |
| AT2G19540.1 | Thale cress | cytosol, mitochondrion, nucleus | 59.01 | 60.77 |
| CDY21659 | Canola | nucleus | 59.01 | 60.25 |
| Solyc05g014090.1.1 | Tomato | mitochondrion | 49.28 | 59.95 |
| Bra040681.1-P | Field mustard | cytosol | 44.93 | 59.94 |
| CDX81935 | Canola | nucleus | 58.59 | 59.58 |
| Bra031087.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 32.92 | 58.67 |
| Solyc05g018780.1.1 | Tomato | cytosol, mitochondrion, nucleus | 45.76 | 58.31 |
| CDX82701 | Canola | nucleus | 46.79 | 58.25 |
| Solyc05g025630.1.1 | Tomato | cytosol, mitochondrion, nucleus | 55.69 | 58.1 |
| CDY35872 | Canola | cytosol, nucleus, plastid | 39.34 | 55.88 |
| TraesCS5A01G331900.1 | Wheat | cytosol | 20.5 | 24.44 |
| TraesCS3A01G250900.2 | Wheat | cytosol | 21.74 | 22.29 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:Histone-bd_RBBP4_N |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF12265 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF6 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS5A01G139800 |
| EnsemblPlants:TraesCS5A01G139800.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
No Description!
Coordinates
chr5A:-:311974838..311984383
Molecular Weight (calculated)
53000.6 Da
IEP (calculated)
4.767
GRAVY (calculated)
-0.455
Length
483 amino acids
Sequence
(BLAST)
(BLAST)
001: MARTIKKARS KRTKGSRKGE ASSSSSTNTA VASGPAQVWQ PGVDALEEGE ELQFDPEAYN YLRGFSIGWP CLSFDVLRDQ LGLVRSEFPH TLYGIAGTQS
101: EKASWNYAGI FKLSNIKGKK REPIPSSALD GDDDMDSDSS SDEDDEEINE DAESILHLQK VAHEGSINRI RSMNQKPEIC ATWGDTGHVQ VWDFSSFIAS
201: LEDPGTVTHK DNGIIHNHVP LKVFSGHKDE GYAIDWSPNV TGRLVSGDCN KCIHLWEPTS SDWSVDAKPF VGHSASVEDL QWNPTEENMF ASCSVDGTIA
301: IWDIRIGRNP CYAPVKVHNS DVNVISWNSL AGSLIASGCD DGSISVHDIR AIESGEPGKS MVAHFAYHKH PITSVEWSPY EASTLAVSSA DNQLTIWDLS
401: LERDAEEEAE FKAKMKEQAN APRDLPPQLL FVHQGQKDLK ELHWHPQIPG MIISTAADGF NVLMPSNIDA TIPSAGASIP MRM
101: EKASWNYAGI FKLSNIKGKK REPIPSSALD GDDDMDSDSS SDEDDEEINE DAESILHLQK VAHEGSINRI RSMNQKPEIC ATWGDTGHVQ VWDFSSFIAS
201: LEDPGTVTHK DNGIIHNHVP LKVFSGHKDE GYAIDWSPNV TGRLVSGDCN KCIHLWEPTS SDWSVDAKPF VGHSASVEDL QWNPTEENMF ASCSVDGTIA
301: IWDIRIGRNP CYAPVKVHNS DVNVISWNSL AGSLIASGCD DGSISVHDIR AIESGEPGKS MVAHFAYHKH PITSVEWSPY EASTLAVSSA DNQLTIWDLS
401: LERDAEEEAE FKAKMKEQAN APRDLPPQLL FVHQGQKDLK ELHWHPQIPG MIISTAADGF NVLMPSNIDA TIPSAGASIP MRM
001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA
Arabidopsis Description
Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.