Factsheet for TraesCS5A01G331900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G473400.1
TraesCS1D01G445700.1
TraesCS3A01G210100.2
TraesCS3B01G240600.1
TraesCSU01G002300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35050.1	TraesCS1B01G473400.1	AT4G05420.1	18223036
AT4G35050.1	TraesCS1D01G445700.1	AT4G05420.1	18223036
AT4G35050.1	TraesCS3A01G210100.2	AT4G05420.1	18223036
AT4G35050.1	TraesCS3B01G240600.1	AT4G05420.1	18223036
AT4G35050.1	TraesCSU01G002300.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G332200.1	Wheat	cytosol	97.04	96.32
TraesCS5D01G337800.1	Wheat	cytosol	95.56	95.79
HORVU2Hr1G092350.1	Barley	cytosol	30.62	89.21
HORVU5Hr1G084160.2	Barley	cytosol	90.86	87.83
Os09t0540600-01	Rice	cytosol	83.7	82.68
EER97107	Sorghum	cytosol	81.48	81.89
Zm00001d022614_P001	Maize	cytosol	79.51	79.9
GSMUA_Achr8P33950_001	Banana	nucleus	63.21	63.37
GSMUA_Achr1P26410_001	Banana	nucleus	60.74	60.44
VIT_03s0038g02430.t01	Wine grape	cytosol	55.31	55.86
PGSC0003DMT400015787	Potato	cytosol	55.31	55.58
Solyc01g111590.2.1	Tomato	cytosol	54.81	55.09
KRH29002	Soybean	nucleus	53.33	53.6
KRH24317	Soybean	nucleus	52.35	52.87
Bra037289.1-P	Field mustard	cytosol	52.84	51.82
CDY47479	Canola	cytosol	52.84	51.69
CDY26787	Canola	cytosol	52.84	51.69
Bra001997.1-P	Field mustard	nucleus	52.1	50.48
AT2G16780.1	Thale cress	cytosol	51.11	49.88
AT4G35050.1	Thale cress	cytosol	50.86	48.58
CDY70131	Canola	cytosol	23.7	45.93
TraesCS3A01G250900.2	Wheat	cytosol	29.63	25.48
TraesCS4A01G187400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	26.17	21.99
TraesCS5A01G139800.1	Wheat	mitochondrion, plastid	24.44	20.5

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12265
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF137
SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS5A01G331900	EnsemblPlants:TraesCS5A01G331900.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr5A:+:540395278..540401376

Molecular Weight (calculated)

44233.7 Da

IEP (calculated)

4.597

GRAVY (calculated)

-0.277

Length

405 amino acids

Sequence
(BLAST)

001: MDGGASFQAV AAAAAMEMEE YLNWKKNAPV LYDLVMSHPL EWPSLTVQWL PSGSPASARS HRLVLGTHAS DDSPNHLMLV DAVLPLPPRL AAAAAAEGRA
101: VPAPSVSIGR SAPHQGEVNR ARCMPQRPYT VATKTCVDEV HVYHLGEDGD KGGADVVLRG HGAEGYGLAW SAMKEGFLLS GSYDKKICLW DLKAGNGAPV
201: LDAQQVFEAH EDVVEDVAWH LKDENLFGSV GDDCKFMMWD LRTNKPEQSI VAHQKEVNSL SFNPFNEWIL ATASGDGTIK LFDLRKLSRS LHAFDNHEGE
301: VFQVEWNPNL ETVLASHAAD KRVMIWDVSR IGEEQADEDA GDGPPELLFV HGGHTAKISE LSWNPSEKWV VASVAEDNVL QIWEVAESIY SDDTSNSNNA
401: SFLST

Best Arabidopsis Sequence Match ( AT5G58230.1 )
(BLAST)

001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS

Arabidopsis Description

MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.