Factsheet for TraesCS5D01G337800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G473400.1
TraesCS1D01G445700.1
TraesCS3A01G210100.2
TraesCS3B01G240600.1
TraesCSU01G002300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35050.1	TraesCS1B01G473400.1	AT4G05420.1	18223036
AT4G35050.1	TraesCS1D01G445700.1	AT4G05420.1	18223036
AT4G35050.1	TraesCS3A01G210100.2	AT4G05420.1	18223036
AT4G35050.1	TraesCS3B01G240600.1	AT4G05420.1	18223036
AT4G35050.1	TraesCSU01G002300.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G331900.1	Wheat	cytosol	95.79	95.56
TraesCS5B01G332200.1	Wheat	cytosol	94.31	93.38
HORVU2Hr1G092350.1	Barley	cytosol	30.45	88.49
HORVU5Hr1G084160.2	Barley	cytosol	89.11	85.92
Os09t0540600-01	Rice	cytosol	82.67	81.46
EER97107	Sorghum	cytosol	80.45	80.65
Zm00001d022614_P001	Maize	cytosol	78.71	78.91
GSMUA_Achr8P33950_001	Banana	nucleus	62.62	62.62
GSMUA_Achr1P26410_001	Banana	nucleus	60.4	59.95
TraesCS5D01G385800.1	Wheat	cytosol	32.67	59.19
VIT_03s0038g02430.t01	Wine grape	cytosol	55.69	56.11
PGSC0003DMT400015787	Potato	cytosol	55.2	55.34
Solyc01g111590.2.1	Tomato	cytosol	54.7	54.84
KRH24317	Soybean	nucleus	52.48	52.87
KRH29002	Soybean	nucleus	52.72	52.85
Bra037289.1-P	Field mustard	cytosol	52.97	51.82
CDY47479	Canola	cytosol	52.97	51.69
CDY26787	Canola	cytosol	52.97	51.69
TraesCS5D01G385600.1	Wheat	nucleus	53.96	50.93
Bra001997.1-P	Field mustard	nucleus	51.98	50.24
AT2G16780.1	Thale cress	cytosol	50.99	49.64
AT4G35050.1	Thale cress	cytosol	50.99	48.58
CDY70131	Canola	cytosol	23.76	45.93
TraesCS3D01G251300.2	Wheat	nucleus	29.46	25.27
TraesCS3D01G373900.1	Wheat	cytosol	18.32	23.34
TraesCS4D01G126000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	25.99	21.78

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12265
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF137
SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS5D01G337800	EnsemblPlants:TraesCS5D01G337800.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:+:426296827..426301957

Molecular Weight (calculated)

44135.5 Da

IEP (calculated)

4.597

GRAVY (calculated)

-0.313

Length

404 amino acids

Sequence
(BLAST)

001: MDGGSSFQAF TAAAAMEMEE YLNWKKNAPV LYDLIVSHPL EWPSLTVQWL PSGSSASARS HRLVLGTHAS DDSPNHLMLV DAVLPLPPRL AAAAAAEGRA
101: VPAPSVSIGR SASHQGEVNR ARCMPQRPYT VATKTCVDEV HVYHLGEDGD KGGADAVLRG HGAEGYGLAW SAMKEGFLLS GSYDKKICLW DLKAGNGAPV
201: LDAQQVFEAH EDVVEDVAWH LKDENLFGSV GDDCKFMMWD LRTNKPEQSM VAHQKEVNSL SFNPFNEWIL ATASGDGTIK LFDLRKLSRS LHAFDNHEGE
301: VFQVEWNPNL ETVLASHAAD KRVMIWDVSR IGEEQADEDA GDGPPELLFV HGGHTAKISE LSWNPSEKWV VASVAEDNVL QIWEVAESIY SDDNGSNSNA
401: QPLP

Best Arabidopsis Sequence Match ( AT5G58230.1 )
(BLAST)

001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS

Arabidopsis Description

MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.