Subcellular Localization
min:
: max
Winner_takes_all: unclear
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
unclear:
25769308
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G002300.1 | Wheat | golgi, plastid | 99.45 | 99.45 |
| TraesCS1B01G473400.1 | Wheat | nucleus | 99.17 | 99.17 |
| HORVU1Hr1G094530.1 | Barley | nucleus, plastid | 98.62 | 93.97 |
| KXG22678 | Sorghum | nucleus | 92.94 | 93.02 |
| Zm00001d039165_P046 | Maize | nucleus | 92.11 | 91.86 |
| Zm00001d009745_P023 | Maize | cytosol, nucleus, plasma membrane, plastid | 88.9 | 88.17 |
| CDY70585 | Canola | plastid | 28.17 | 86.48 |
| GSMUA_Achr8P07200_001 | Banana | cytosol, nucleus, plasma membrane | 84.31 | 84.39 |
| KRH43086 | Soybean | nucleus | 15.5 | 83.25 |
| VIT_10s0003g04360.t01 | Wine grape | cytosol, nucleus, plasma membrane | 82.94 | 83.01 |
| KRH59213 | Soybean | cytosol, plasma membrane, plastid | 37.89 | 82.6 |
| AT4G05420.1 | Thale cress | cytosol, nucleus, peroxisome | 81.74 | 81.89 |
| KRH25071 | Soybean | nucleus | 44.77 | 81.74 |
| CDY69930 | Canola | plastid | 35.05 | 81.45 |
| Solyc02g021650.2.1 | Tomato | nucleus | 81.65 | 81.28 |
| Bra029577.1-P | Field mustard | nucleus, peroxisome, plastid | 80.83 | 81.12 |
| KRH59212 | Soybean | cytosol, nucleus | 39.54 | 80.86 |
| CDY68484 | Canola | cytosol, endoplasmic reticulum, vacuole | 39.17 | 79.81 |
| AT4G21100.1 | Thale cress | nucleus | 79.36 | 79.5 |
| CDY69266 | Canola | nucleus | 39.91 | 79.38 |
| CDY57060 | Canola | cytosol, nucleus, plasma membrane | 78.07 | 77.15 |
| CDX76416 | Canola | cytosol | 77.71 | 75.09 |
| Bra020884.1-P | Field mustard | cytosol | 77.61 | 65.99 |
| CDY50606 | Canola | golgi, mitochondrion, plasma membrane | 13.12 | 45.25 |
| PGSC0003DMT400009595 | Potato | nucleus | 10.83 | 45.21 |
| CDY54326 | Canola | cytosol | 7.25 | 34.5 |
| TraesCS6D01G095000.1 | Wheat | mitochondrion | 21.83 | 19.4 |
| TraesCS2D01G245600.6 | Wheat | plastid | 19.08 | 15.28 |
Protein Annotations
| MapMan:14.6.1.3.1 | MapMan:19.2.2.8.3.2 | Gene3D:2.130.10.10 | MapMan:26.1.1.3.2 | Gene3D:3.30.980.30 | InterPro:Cleavage/polyA-sp_fac_asu_C |
| ncoils:Coil | InterPro:DDB1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006281 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR015943 |
| PFAM:PF03178 | PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF3 | InterPro:Quinoprotein_ADH-like_supfam | SUPFAM:SSF50998 |
| EnsemblPlantsGene:TraesCS1D01G445700 | EnsemblPlants:TraesCS1D01G445700.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1D:+:488567907..488577878
Molecular Weight (calculated)
121954.0 Da
IEP (calculated)
5.024
GRAVY (calculated)
-0.105
Length
1090 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSTWNYVVTA HKPTSVSHSC VGNFTGPHQL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATIELFRP HNEAQDFLFI ATERYKFCVL QWDAEKSELL
0101: TRSMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLY GCVRPTIVVL YQDNKDARHV KTYEVALKEK
0201: DFVEGPWSQN NLDNGAGLLI PVPAPLGGVI IIGEETIVYC NANSTFKAIP IKQSITRAYG RVDPDGSRYL LGDNAGILHL LVLTQERERV TGLKIEHLGE
0301: TSVASSISYL DNGVVYVGSR FGDSQLVKLN LQPDATGSFV EILERYVNLG PIVDFCVVDL DRQGQGQVVT CSGAFKDGSI RVVRNGIGIN EQASVELQGI
0401: KGLWSLKSSF SDLYDMYLVV SFISETRFLA MNMEDELEEI EIEGFDAQIQ TLFCQNAIND MLIQVTANSV RLVSCTSREL VDQWNAPEGF SVNVASANAS
0501: QVLLATGGGH LVYLEIRDAK LVEVKHAQLE HEISCVDLNP VGENPQYSSL AAIGMWTDIS VSIFSLPDLE LIRKENLGVE IVPRSVLMCT LEGISYLLCA
0601: LGDGHLFSFL LNASTGELTD RKKVSLGTQP ISLRTFSSKG TTHVFASSDR PTVIYSSNKK LLYSNVNLKE VNHMCPFNTA AFPDSLAIAK EGELSIGTID
0701: DIQKLHIRTI PLNEQARRIC HQEQSRTLAF CSFKYTQNSM EESEAHFIRL MDHQTFEFLS THPLDQYECG CSMISCSFSD DNNFYYCVGT AYVLPEENEP
0801: TKGRILVFAV EDGRLQLIVE KETKGAVYSL NAFNGKLLAA INQKIQLYKW MTREDGSHEL QSECGHHGHI LALYTQTRGD FIVVGDLMKS ISLLVYKHEE
0901: SAIEELARDY NANWMTAVEM IDDDIYVGAE NSYNLFTVRK NSDAATDEER GRLEVVGEYH LGEFVNRFRH GSLVMRLPDS EMGQIPTVIF GTINGVIGII
1001: ASLPHDHYVF LEKLQTTLVK FIKGVGSLSH EQWRSFHNDK KTSEARNFLD GDLIESFLDL NRSKMEEVAK AMAVPVEELS KRVEELMRLH
0101: TRSMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLY GCVRPTIVVL YQDNKDARHV KTYEVALKEK
0201: DFVEGPWSQN NLDNGAGLLI PVPAPLGGVI IIGEETIVYC NANSTFKAIP IKQSITRAYG RVDPDGSRYL LGDNAGILHL LVLTQERERV TGLKIEHLGE
0301: TSVASSISYL DNGVVYVGSR FGDSQLVKLN LQPDATGSFV EILERYVNLG PIVDFCVVDL DRQGQGQVVT CSGAFKDGSI RVVRNGIGIN EQASVELQGI
0401: KGLWSLKSSF SDLYDMYLVV SFISETRFLA MNMEDELEEI EIEGFDAQIQ TLFCQNAIND MLIQVTANSV RLVSCTSREL VDQWNAPEGF SVNVASANAS
0501: QVLLATGGGH LVYLEIRDAK LVEVKHAQLE HEISCVDLNP VGENPQYSSL AAIGMWTDIS VSIFSLPDLE LIRKENLGVE IVPRSVLMCT LEGISYLLCA
0601: LGDGHLFSFL LNASTGELTD RKKVSLGTQP ISLRTFSSKG TTHVFASSDR PTVIYSSNKK LLYSNVNLKE VNHMCPFNTA AFPDSLAIAK EGELSIGTID
0701: DIQKLHIRTI PLNEQARRIC HQEQSRTLAF CSFKYTQNSM EESEAHFIRL MDHQTFEFLS THPLDQYECG CSMISCSFSD DNNFYYCVGT AYVLPEENEP
0801: TKGRILVFAV EDGRLQLIVE KETKGAVYSL NAFNGKLLAA INQKIQLYKW MTREDGSHEL QSECGHHGHI LALYTQTRGD FIVVGDLMKS ISLLVYKHEE
0901: SAIEELARDY NANWMTAVEM IDDDIYVGAE NSYNLFTVRK NSDAATDEER GRLEVVGEYH LGEFVNRFRH GSLVMRLPDS EMGQIPTVIF GTINGVIGII
1001: ASLPHDHYVF LEKLQTTLVK FIKGVGSLSH EQWRSFHNDK KTSEARNFLD GDLIESFLDL NRSKMEEVAK AMAVPVEELS KRVEELMRLH
0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH
Arabidopsis Description
DDB1ADDB1A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD4]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.