Factsheet for TraesCS3B01G231100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G473400.1
TraesCS1D01G445700.1
TraesCS3A01G210100.2
TraesCS3B01G240600.1
TraesCSU01G002300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10180.1	TraesCS1B01G473400.1	AT4G05420.1	16792691
AT4G10180.1	TraesCS1D01G445700.1	AT4G05420.1	16792691
AT4G10180.1	TraesCS3A01G210100.2	AT4G05420.1	16792691
AT4G10180.1	TraesCS3B01G240600.1	AT4G05420.1	16792691
AT4G10180.1	TraesCSU01G002300.1	AT4G05420.1	16792691

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G194600.1	Wheat	mitochondrion	99.61	99.61
HORVU3Hr1G044640.3	Barley	mitochondrion	90.22	95.64
Os01t0104600-01	Rice	mitochondrion	91.98	91.98
EES13430	Sorghum	mitochondrion	91.59	91.59
Zm00001d020989_P011	Maize	plastid	87.48	83.09
GSMUA_Achr7P07400_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	35.42	75.1
Solyc01g056340.2.1	Tomato	mitochondrion	69.08	67.5
VIT_15s0048g02140.t01	Wine grape	mitochondrion	70.06	67.42
KRH27796	Soybean	mitochondrion	70.25	66.98
KRH77746	Soybean	mitochondrion	70.25	66.98
KRH15950	Soybean	cytosol	51.27	65.34
PGSC0003DMT400080769	Potato	cytosol	37.57	64.65
Bra000702.1-P	Field mustard	mitochondrion, nucleus, plastid	65.36	62.2
CDX90747	Canola	mitochondrion, nucleus, plastid	65.36	62.2
CDY05087	Canola	plastid	64.97	61.94
AT4G10180.1	Thale cress	mitochondrion, nucleus, peroxisome	65.56	61.69
Zm00001d040485_P001	Maize	mitochondrion	17.81	61.07
KRH18185	Soybean	nucleus	8.41	58.11
Zm00001d024743_P001	Maize	cytosol	12.92	56.9

Protein Annotations

EnsemblPlants:TraesCS3B01G231100.1	EnsemblPlantsGene:TraesCS3B01G231100	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:De-etiolated_protein_1_Det1	PANTHER:PTHR13374	PFAM:PF09737	MapMan:19.2.2.8.3.3.2	:

Description

No Description!

Coordinates

chr3B:-:349269585..349305425

Molecular Weight (calculated)

59227.9 Da

IEP (calculated)

7.347

GRAVY (calculated)

-0.304

Length

511 amino acids

Sequence
(BLAST)

001: MVGFFRSGNL ASRVFDRQFL SPRPGATVNT VRQFYENLVP SYTIYDIDCP DYSFRKFTDD GKYLVAFSRN HQDLIVYRPI WLTFSCHEEC DSHDLPANAE
101: RFDSFFKQLY SISLASSNEY ICKDFFLYME CHQYGLFATS TAQSNDSSAT DGAIHGVPSI EKITFYLVRL EDGAILDEKA FCNDFINLAH SIGAYLYEDL
201: VCIVSLRYQT IHVLQIRDSG SLVEVRRIGA FCREDDELFL YSHGQAAQGN SFLPGIKQRL LSFIFRKTWN EEPDQALRVQ HLKKKFYFHF QDYVDLIIWK
301: VQFLDRRHLF IKFGSVDGGV TRSTDQNLAF FAVYNMETTD IVSLYQNSSE ELYSLFEHYY DHFHANPQNS SHEKFISSHS NSVHALDQLR TIKNKASSSS
401: QFVKKMMASL PYTCQSQSPS PYFDLSIFRY DEKLISAIDR HRHCTEHPIK FISVRQPNVV KFKIKPGSDS GGSDSRAKRI SSFLFHPFFP LALSIQQTYM
501: QPTVVNVHFR R

Best Arabidopsis Sequence Match ( AT4G10180.1 )
(BLAST)

001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR

Arabidopsis Description

DET1Light-mediated development protein DET1 [Source:UniProtKB/Swiss-Prot;Acc:P48732]
SUBAcon: [mitochondrion,peroxisome,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.