Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d009745_P023 | |
| Zm00001d039165_P046 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G10180.1 | Zm00001d009745_P023 | AT4G05420.1 | 16792691 |
| AT4G10180.1 | Zm00001d039165_P046 | AT4G05420.1 | 16792691 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13430 | Sorghum | mitochondrion | 87.92 | 92.56 |
| Os01t0104600-01 | Rice | mitochondrion | 83.64 | 88.06 |
| TraesCS3B01G231100.1 | Wheat | mitochondrion | 83.09 | 87.48 |
| TraesCS3A01G194600.1 | Wheat | mitochondrion | 82.71 | 87.08 |
| TraesCS4D01G180900.3 | Wheat | mitochondrion | 81.23 | 85.52 |
| HORVU3Hr1G044640.3 | Barley | mitochondrion | 75.65 | 84.44 |
| Zm00001d009288_P014 | Maize | mitochondrion | 80.11 | 84.02 |
| TraesCS4A01G125100.1 | Wheat | plastid | 81.41 | 77.52 |
| GSMUA_Achr7P07400_001 | Banana | cytosol, mitochondrion, nucleus, peroxisome | 33.83 | 75.52 |
| Zm00001d040485_P001 | Maize | mitochondrion | 19.14 | 69.13 |
| Solyc01g056340.2.1 | Tomato | mitochondrion | 65.8 | 67.69 |
| KRH77746 | Soybean | mitochondrion | 65.8 | 66.04 |
| VIT_15s0048g02140.t01 | Wine grape | mitochondrion | 64.87 | 65.72 |
| KRH27796 | Soybean | mitochondrion | 65.43 | 65.67 |
| KRH15950 | Soybean | cytosol | 48.14 | 64.59 |
| PGSC0003DMT400080769 | Potato | cytosol | 34.76 | 62.96 |
| CDY05087 | Canola | plastid | 61.71 | 61.94 |
| CDX90747 | Canola | mitochondrion, nucleus, plastid | 61.52 | 61.64 |
| Bra000702.1-P | Field mustard | mitochondrion, nucleus, plastid | 61.52 | 61.64 |
| KRH18185 | Soybean | nucleus | 8.36 | 60.81 |
| AT4G10180.1 | Thale cress | mitochondrion, nucleus, peroxisome | 61.15 | 60.59 |
| Zm00001d024743_P001 | Maize | cytosol | 13.01 | 60.34 |
Protein Annotations
| EMBL:BT083626 | EnsemblPlants:Zm00001d020989_P011 | EnsemblPlants:Zm00001d020989_T011 | EnsemblPlantsGene:Zm00001d020989 | EntrezGene:100281541 | InterPro:De-etiolated_protein_1_Det1 |
| PANTHER:PTHR13374 | PFAM:PF09737 | ProteinID:ONM56041.1 | ProteinID:ONM56048.1 | UniParc:UPI0001A4BB4E | UniProt:C4IYH9 |
| MapMan:19.2.2.8.3.3.2 | : | : | : | : | : |
Description
Light-mediated development protein DET1
Coordinates
chr7:+:139575206..139624014
Molecular Weight (calculated)
62032.7 Da
IEP (calculated)
7.636
GRAVY (calculated)
-0.277
Length
538 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPPSPPASQ VRTCDAGAAQ SPTRGTVSEM ARYFRSSNLA SRVFERQLIS PRPGATVNTI RQFYENLVPS YTIYDIDCPD YSFRKFTDDG KYFVAFSRNH
101: QDLIVYRPIW LTYSCNEECD PHELPPKAKK FDSFFKQLYS IPLASGNEYI CKDFFLYMEC HRFGLFATST AQSNESTATE GAIHGVPLIE KITFHLVRLE
201: DGVILDEKAF CNDFINLAHS IGAYMYEDLL CIVSLRYQTI HILQIRDSGN LVEVRSIGAF CREDDELFLH SHVQTGYAGS FLPGIKQRLL SYIFCKTWNE
301: VPDQTLRVQH LKKFYFHFQD YVDLIIWKVQ FLDRHHLFVK FGSVDGGVSR STDQNLAFFA VYNMETTDIV SLHQNSSEEL YALFEQFYDH FHANPQASSH
401: GKFISSHSND IHALDQLRVI KNKASSSSQF VKKMMTSLPY TCQSQSPSPY FDLSLFRYDE KLISAIDRHR HCTEHPIKFI SVRQNVVKFK IKPGSDSGAS
501: DSRIKRISSF LFHPFFPLAL SIQQTYMQPT VLNIHFRR
101: QDLIVYRPIW LTYSCNEECD PHELPPKAKK FDSFFKQLYS IPLASGNEYI CKDFFLYMEC HRFGLFATST AQSNESTATE GAIHGVPLIE KITFHLVRLE
201: DGVILDEKAF CNDFINLAHS IGAYMYEDLL CIVSLRYQTI HILQIRDSGN LVEVRSIGAF CREDDELFLH SHVQTGYAGS FLPGIKQRLL SYIFCKTWNE
301: VPDQTLRVQH LKKFYFHFQD YVDLIIWKVQ FLDRHHLFVK FGSVDGGVSR STDQNLAFFA VYNMETTDIV SLHQNSSEEL YALFEQFYDH FHANPQASSH
401: GKFISSHSND IHALDQLRVI KNKASSSSQF VKKMMTSLPY TCQSQSPSPY FDLSLFRYDE KLISAIDRHR HCTEHPIKFI SVRQNVVKFK IKPGSDSGAS
501: DSRIKRISSF LFHPFFPLAL SIQQTYMQPT VLNIHFRR
001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR
Arabidopsis Description
DET1Light-mediated development protein DET1 [Source:UniProtKB/Swiss-Prot;Acc:P48732]
SUBAcon: [mitochondrion,peroxisome,nucleus]
SUBAcon: [mitochondrion,peroxisome,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.