Factsheet for Zm00001d024743_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009745_P023
Zm00001d039165_P046

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10180.1	Zm00001d009745_P023	AT4G05420.1	16792691
AT4G10180.1	Zm00001d039165_P046	AT4G05420.1	16792691

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040485_P001	Maize	mitochondrion	93.1	72.48
GSMUA_Achr7P07400_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	52.59	25.31
Zm00001d009288_P014	Maize	mitochondrion	62.93	14.23
KRH18185	Soybean	nucleus	8.62	13.51
HORVU3Hr1G044640.3	Barley	mitochondrion	56.03	13.49
KRH15950	Soybean	cytosol	46.55	13.47
EES13430	Sorghum	mitochondrion	57.76	13.11
Zm00001d020989_P011	Maize	plastid	60.34	13.01
TraesCS3B01G231100.1	Wheat	mitochondrion	56.9	12.92
TraesCS3A01G194600.1	Wheat	mitochondrion	56.9	12.92
Os01t0104600-01	Rice	mitochondrion	56.03	12.72
TraesCS4D01G180900.3	Wheat	mitochondrion	55.17	12.52
AT4G10180.1	Thale cress	mitochondrion, nucleus, peroxisome	53.45	11.42
CDY05087	Canola	plastid	51.72	11.19
TraesCS4A01G125100.1	Wheat	plastid	54.31	11.15
CDX90747	Canola	mitochondrion, nucleus, plastid	50.86	10.99
Bra000702.1-P	Field mustard	mitochondrion, nucleus, plastid	50.86	10.99
Solyc01g056340.2.1	Tomato	mitochondrion	48.28	10.71
VIT_15s0048g02140.t01	Wine grape	mitochondrion	48.28	10.55
KRH77746	Soybean	mitochondrion	46.55	10.07
KRH27796	Soybean	mitochondrion	46.55	10.07
PGSC0003DMT400080769	Potato	cytosol	3.45	1.35

Protein Annotations

EnsemblPlants:Zm00001d024743_P001	EnsemblPlants:Zm00001d024743_T001	EnsemblPlantsGene:Zm00001d024743	InterPro:De-etiolated_protein_1_Det1	PFAM:PF09737	ProteinID:AQK41944.1
UniParc:UPI00084319DE	UniProt:A0A1D6J1L8	MapMan:19.2.2.8.3.3.2	:	:	:

Description

Light-mediated development protein DET1

Coordinates

chr10:+:85863842..85866636

Molecular Weight (calculated)

13674.3 Da

IEP (calculated)

9.661

GRAVY (calculated)

-0.130

Length

116 amino acids

Sequence
(BLAST)

001: MRVQHLKKKF YFHFQDYVDL IIWKLKSSFN SLRAITVLLA RSFSHKTFFS RGPYSMVVDQ AQFLDRQHLF VKFGSVDGGV SRSTDQNLAF FVVYNMETTD
101: IVSVHQNSSE DIYAWY

Best Arabidopsis Sequence Match ( AT4G10180.1 )
(BLAST)

001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR

Arabidopsis Description

DET1Light-mediated development protein DET1 [Source:UniProtKB/Swiss-Prot;Acc:P48732]
SUBAcon: [nucleus,peroxisome,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.