Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG22678 | Sorghum | nucleus | 97.9 | 98.26 |
| Zm00001d009745_P023 | Maize | cytosol, nucleus, plasma membrane, plastid | 94.33 | 93.81 |
| TraesCS1B01G473400.1 | Wheat | nucleus | 92.04 | 92.29 |
| TraesCSU01G002300.1 | Wheat | golgi, plastid | 91.95 | 92.2 |
| TraesCS1D01G445700.1 | Wheat | unclear | 91.86 | 92.11 |
| HORVU1Hr1G094530.1 | Barley | nucleus, plastid | 92.77 | 88.64 |
| CDY70585 | Canola | plastid | 27.81 | 85.63 |
| GSMUA_Achr8P07200_001 | Banana | cytosol, nucleus, plasma membrane | 84.08 | 84.39 |
| KRH43086 | Soybean | nucleus | 15.64 | 84.24 |
| VIT_10s0003g04360.t01 | Wine grape | cytosol, nucleus, plasma membrane | 82.89 | 83.2 |
| KRH59213 | Soybean | cytosol, plasma membrane, plastid | 37.97 | 83.0 |
| KRH25071 | Soybean | nucleus | 45.2 | 82.75 |
| AT4G05420.1 | Thale cress | cytosol, nucleus, peroxisome | 82.25 | 82.63 |
| Solyc02g021650.2.1 | Tomato | nucleus | 82.07 | 81.92 |
| Bra029577.1-P | Field mustard | nucleus, peroxisome, plastid | 81.24 | 81.77 |
| CDY69930 | Canola | plastid | 34.95 | 81.45 |
| CDY68484 | Canola | cytosol, endoplasmic reticulum, vacuole | 39.43 | 80.56 |
| AT4G21100.1 | Thale cress | nucleus | 80.15 | 80.51 |
| CDY69266 | Canola | nucleus | 40.16 | 80.11 |
| KRH59212 | Soybean | cytosol, nucleus | 38.98 | 79.92 |
| CDY57060 | Canola | cytosol, nucleus, plasma membrane | 78.5 | 77.79 |
| CDX76416 | Canola | cytosol | 78.04 | 75.62 |
| Bra020884.1-P | Field mustard | cytosol | 77.95 | 66.46 |
| PGSC0003DMT400009595 | Potato | nucleus | 10.98 | 45.98 |
| CDY50606 | Canola | golgi, mitochondrion, plasma membrane | 13.17 | 45.57 |
| CDY54326 | Canola | cytosol | 7.59 | 36.24 |
| Zm00001d015208_P003 | Maize | extracellular, plasma membrane | 21.68 | 19.28 |
| Zm00001d019115_P048 | Maize | plastid | 19.58 | 15.78 |
Protein Annotations
| EntrezGene:100217253 | EntrezGene:100279448 | MapMan:14.6.1.3.1 | MapMan:19.2.2.8.3.2 | Gene3D:2.130.10.10 | MapMan:26.1.1.3.2 |
| Gene3D:3.30.980.30 | UniProt:A0A1D6ME60 | ProteinID:AQK88928.1 | ProteinID:AQK88958.1 | InterPro:Cleavage/polyA-sp_fac_asu_C | ncoils:Coil |
| InterPro:DDB1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR015943 | PFAM:PF03178 |
| PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF3 | InterPro:Quinoprotein_ADH-like_supfam | SUPFAM:SSF50978 | SUPFAM:SSF50998 |
| UniParc:UPI0004DEC42F | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat_dom_sf | EnsemblPlantsGene:Zm00001d039165 | EnsemblPlants:Zm00001d039165_P046 | EnsemblPlants:Zm00001d039165_T046 |
| SEG:seg | : | : | : | : | : |
Description
DNA damage-binding protein 1a
Coordinates
chr6:-:171573326..171582712
Molecular Weight (calculated)
121964.0 Da
IEP (calculated)
5.018
GRAVY (calculated)
-0.099
Length
1093 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSVWNYVVTA HKPTSVSHSC VGNFTSPNQL NLIIAKCTRI EIHLLTPQGL QPMLDVPIYG RIATIELFRP HNETQDFLFI ATERYKFCVL QWDAEKSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLH GCAKPTIVVL YQDNKDVRHV KTYEVALKDK
0201: DFVEGPWSQN NVDNGAGLLI PVPAPLGGVI IIGEEQIVYC NANSTFKAIP IKQISWQSII RAYGRVDPDG SRYLLGDNTG ILHLLVLTHE RERVTGLKIE
0301: YLGETSIASS ISYLDNGVVY VGSRFGDSQL VKLNLQADAS GSFVEILERY VNLGPIVDFC VVDLDRQGQG QVVTCSGAFK DGSLRVVRNG IGINEQASVE
0401: LQGIKGLWSL KSSINDPFDM YLVVSFISET RFLAMNMEDE LEETEIEGFD AQTQTLFCQN AINDLLIQVT ANSVRLVSCT SRELVNQWNA PAGFSVNVAS
0501: ANASQVLLAT GGGHLVYLEI RDAKLVEVKH AQLEHEISCL DLNPIGENPQ YSSLAAVGMW TDISVRIFSL PDLELIRKEN LGGEIVPRSV LLCTLEGVSY
0601: LLCALGDGNL FSFLLNASTG ELTDRKKVTL GTQPISLRTF SSKGTTHVFA SSDRPTVIYS SNKKLLYSNV NLKEVNHMCP FNTAAFPDSL AIAKEGELSI
0701: GTIDDIQKLH IRTIPLNEQA RRICHQEQSR TLAFCSFKYN QSVEESETHL IRLLDHQTFE SLCVYPLDQY ECGCSIISCS FADDSNVYYC VGTAYVIPEE
0801: NEPTKGRILV FAVEDGSLQL IVEKETKGAV YSLNAFNGKL LAAINQKIQL YKWMSREDGS HELQSECGHH GHILALYTQT RGDFIVVGDL MKSISLLVYK
0901: HEESAIEERA RDYNANWMTA VEMLDDEVYV GAENSYNLFT VRKNSDAATD DERARLEVVG EYHLGEFVNR FRHGSLVMRL PDSDIGQIPT VIFGTINGVI
1001: GIIASLPHDQ YIFLEKLQST LVKYIKGVGN LSHEQWRSFH NDKKTAEARN FLDGDLIESF LDLSRSKMEE VSKAMGVPVE ELSKRVEELT RLH
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLH GCAKPTIVVL YQDNKDVRHV KTYEVALKDK
0201: DFVEGPWSQN NVDNGAGLLI PVPAPLGGVI IIGEEQIVYC NANSTFKAIP IKQISWQSII RAYGRVDPDG SRYLLGDNTG ILHLLVLTHE RERVTGLKIE
0301: YLGETSIASS ISYLDNGVVY VGSRFGDSQL VKLNLQADAS GSFVEILERY VNLGPIVDFC VVDLDRQGQG QVVTCSGAFK DGSLRVVRNG IGINEQASVE
0401: LQGIKGLWSL KSSINDPFDM YLVVSFISET RFLAMNMEDE LEETEIEGFD AQTQTLFCQN AINDLLIQVT ANSVRLVSCT SRELVNQWNA PAGFSVNVAS
0501: ANASQVLLAT GGGHLVYLEI RDAKLVEVKH AQLEHEISCL DLNPIGENPQ YSSLAAVGMW TDISVRIFSL PDLELIRKEN LGGEIVPRSV LLCTLEGVSY
0601: LLCALGDGNL FSFLLNASTG ELTDRKKVTL GTQPISLRTF SSKGTTHVFA SSDRPTVIYS SNKKLLYSNV NLKEVNHMCP FNTAAFPDSL AIAKEGELSI
0701: GTIDDIQKLH IRTIPLNEQA RRICHQEQSR TLAFCSFKYN QSVEESETHL IRLLDHQTFE SLCVYPLDQY ECGCSIISCS FADDSNVYYC VGTAYVIPEE
0801: NEPTKGRILV FAVEDGSLQL IVEKETKGAV YSLNAFNGKL LAAINQKIQL YKWMSREDGS HELQSECGHH GHILALYTQT RGDFIVVGDL MKSISLLVYK
0901: HEESAIEERA RDYNANWMTA VEMLDDEVYV GAENSYNLFT VRKNSDAATD DERARLEVVG EYHLGEFVNR FRHGSLVMRL PDSDIGQIPT VIFGTINGVI
1001: GIIASLPHDQ YIFLEKLQST LVKYIKGVGN LSHEQWRSFH NDKKTAEARN FLDGDLIESF LDLSRSKMEE VSKAMGVPVE ELSKRVEELT RLH
0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH
Arabidopsis Description
DDB1ADDB1A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD4]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.