Factsheet for Zm00001d008597_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 2
peroxisome 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	peroxisome
TargetP:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009745_P023
Zm00001d013116_P002
Zm00001d034361_P001
Zm00001d039165_P046

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58760.1	Zm00001d009745_P023	AT4G05420.1	16792691
AT5G58760.1	Zm00001d039165_P046	AT4G05420.1	16792691
AT5G58760.1	Zm00001d009745_P023	AT4G05420.1	18551167
AT5G58760.1	Zm00001d039165_P046	AT4G05420.1	18551167
AT5G58760.1	Zm00001d013116_P002	AT5G46210.1	18551167
AT5G58760.1	Zm00001d034361_P001	AT5G46210.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00342	Sorghum	cytosol, mitochondrion, nucleus, peroxisome	88.42	86.45
Os01t0141700-01	Rice	nucleus	78.25	76.5
TraesCS3D01G054200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	75.96	75.96
TraesCS3B01G066200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	75.96	75.17
TraesCS3A01G054700.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	75.26	75.0
KRH72670	Soybean	cytosol	28.42	61.36
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	55.79	58.03
VIT_06s0004g06550.t01	Wine grape	nucleus	55.26	56.35
KRH17028	Soybean	nucleus	54.91	55.79
CDY32686	Canola	nucleus	51.75	54.13
Bra020355.1-P	Field mustard	nucleus	51.75	53.93
KRH72668	Soybean	nucleus	27.19	53.26
AT5G58760.1	Thale cress	nucleus	51.93	53.14
CDY02834	Canola	nucleus	51.4	52.98
Solyc09g031610.2.1	Tomato	nucleus	50.0	48.55
PGSC0003DMT400056773	Potato	nucleus	11.58	45.52

Protein Annotations

EntrezGene:100381699	MapMan:14.6.1.3.2	Gene3D:2.130.10.10	UniProt:A0A1D6FE32	ProteinID:AQK90233.1	InterPro:DDB2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987
GO:GO:0010224	GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR15169	PANTHER:PTHR15169:SF0	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0008428913	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d008597	EnsemblPlants:Zm00001d008597_P001	EnsemblPlants:Zm00001d008597_T001	SEG:seg	:

Description

Protein DAMAGED DNA-BINDING 2

Coordinates

chr8:-:13987467..13992282

Molecular Weight (calculated)

63548.3 Da

IEP (calculated)

8.374

GRAVY (calculated)

-0.617

Length

570 amino acids

Sequence
(BLAST)

001: MGPTTRAHFV YNRRRRRRRG GRHAVEEASD EEQQQMDSSS SSSDEEGDQE EDAEASGEDV DDEEEEEAVA AEPAPKQPPA AAAAGEKRGR RKGSITISLK
101: KVCKACKRTG HQAGFKGAVY IDCPMKPCFL CKMPGCHTTL TCPHRVTMEH GVIPAPKRNA NTSLDYVFQS QVKGKIPMVK PKFLIPNQLE HGNIKFHQRR
201: VTCLEFHPTK NSVLLSGDKK GLLGIWDYVK LHEKITYDSV HSCILNSMKI DTTNDGMIYT ASSDGTISCT DLDTGIGSPL LNLNPNGWNV SLLWSCSIDH
301: FVQKEFMKML FQSLSTFPHL VLLDRRSKTR IGHPILIHKK GSKVTSLHCN PARPEVLLSS GNDHYARIWD TRKLEANSPL ASLAHGRVVN SGYFSPRSGN
401: KILTTCQDNR IRVWDYILGD LQSPSREIVH SHDFNRHLTP FKAEWDPKDY TETVAVIGRY ISENYNGVAL HPIDFIDTSS GKLLAEVMDP DIITISPVNK
501: LHPQDDILAT GSSRSIFIWK PKIEDELTEE RAKHDNSSDD DSGGDSGGKN KKAKKTRFTH AVKGKGKSKV

Best Arabidopsis Sequence Match ( AT5G58760.1 )
(BLAST)

001: MSSTRSRRKR DPEIVIARDT DSELSSSEEE EEEEDNYPFS ESEEEDEAVK NGGKIELEKN KAKGKAPITV KLIKKVCKVC KQPGHEAGFK GATYIDCPMK
101: PCFLCKMPGH TTMSCPHRVV TDHGILPTSH RNTKNPIDFV FKRQLQPRIP PIKPKYVIPD QVHCAVIRYH SRRVTCLEFH PTKNNILLSG DKKGQIGVWD
201: FGKVYEKNVY GNIHSVQVNN MRFSPTNDDM VYSASSDGTI GYTDLETGTS STLLNLNPDG WQGANSWKML YGMDINSEKG VVLAADNFGF LHMIDHRTNN
301: STGEPILIHK QGSKVCGLDC NPVQPELLLS CGNDHFARIW DMRKLQPKAS LHDLAHKRVV NSAYFSPSSG TKILTTCQDN RIRIWDSIFG NLDLPSREIV
401: HSNDFNRHLT PFKAEWDPKD TSESLIVIGR YISENYNGTA LHPIDFIDAS NGQLVAEVMD PNITTITPVN KLHPRDDVLA SGSSRSLFIW RPQDNTEMVE
501: EKKDKKIIIC YGDSKKKGKK QKRGSDDEDD EDDIFSSKGK NIKVNKYQAK TTKKTKT

Arabidopsis Description

DDB2Protein DAMAGED DNA-BINDING 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.