Factsheet for Bra020355.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra017569.1-P
Bra022023.1-P
Bra025031.1-P
Bra029577.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58760.1	Bra029577.1-P	AT4G05420.1	16792691
AT5G58760.1	Bra029577.1-P	AT4G05420.1	18551167
AT5G58760.1	Bra017569.1-P	AT5G46210.1	18551167
AT5G58760.1	Bra022023.1-P	AT5G46210.1	18551167
AT5G58760.1	Bra025031.1-P	AT5G46210.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32686	Canola	nucleus	99.45	99.82
AT5G58760.1	Thale cress	nucleus	85.74	84.2
KRH72670	Soybean	cytosol	34.92	72.35
VIT_06s0004g06550.t01	Wine grape	nucleus	70.57	69.05
KRH17028	Soybean	nucleus	69.84	68.09
KRH72668	Soybean	nucleus	34.55	64.95
Solyc09g031610.2.1	Tomato	nucleus	64.72	60.31
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	58.32	58.21
PGSC0003DMT400056773	Potato	nucleus	15.36	57.93
Os01t0141700-01	Rice	nucleus	60.33	56.6
TraesCS3D01G054200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	57.77	55.44
TraesCS3A01G054700.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	57.59	55.07
TraesCS3B01G066200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	57.4	54.51
EES00342	Sorghum	cytosol, mitochondrion, nucleus, peroxisome	57.77	54.2
Zm00001d008597_P001	Maize	mitochondrion, nucleus	53.93	51.75

Protein Annotations

MapMan:14.6.1.3.2	Gene3D:2.130.10.10	Gene3D:4.10.60.10	EnsemblPlantsGene:Bra020355	EnsemblPlants:Bra020355.1	EnsemblPlants:Bra020355.1-P
ncoils:Coil	InterPro:DDB2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009628	GO:GO:0009987	GO:GO:0010224	GO:GO:0080008	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:M4DV12	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR15169	PANTHER:PTHR15169:SF0	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002542FF9
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

AT5G58760 (E=7e-244) DDB2 | DDB2 (damaged DNA-binding 2); nucleic acid binding / nucleotide binding / zinc ion binding

Coordinates

chrA02:+:6368809..6371524

Molecular Weight (calculated)

61451.0 Da

IEP (calculated)

8.081

GRAVY (calculated)

-0.659

Length

547 amino acids

Sequence
(BLAST)

001: MGLTRNRRKK EPEIVIARDT ESSSSEEEDD YPLSESEKED EEVKIELDKS KAKGKAPITV KLKKVCKVCK QPGHEAGFKG ATYIDCPMKP CFLCKMPGHT
101: TMSCPHRVVT DQGILPTSHR NTKNPIDFVF MRQLQPRIPP IKPPYVIPDQ VHCAVIRYHS RRVTCLEFHP TRNNILLSGD KKGQIGVWDF AKVYEKSVYG
201: DIHSVQVNNM RFSPTNDDMV YSASSDGKVG YTDLETGTSS TLLNLNPNGW QGPTTWNMLY GLDINSDKGL VLAADNFGLL HMIDHRSNNV TGEPILIHKK
301: GSKVVGLDCN PVHPELLLSC GNDHFARIWD MRKLQPGESL NDLAHKRVVN SAYFSPSSGT KILTTSQDNR IRVWDSIFGD LDSPSREIVH SHDFNRHLTP
401: FKAEWDPKDA SESLIVVGRY ISENYNGAAL HPIDFIDSSN GQLVAEVMDP NITTITPVNK LHPRDDVLAS GSSRSLFIWR PQEKAEMVEE KEKEKKIVIC
501: YGDSNKKGKK QKRGSDDEDE DDDMFSSKGK NIKAKAKTTK STRKTKA

Best Arabidopsis Sequence Match ( AT5G58760.1 )
(BLAST)

001: MSSTRSRRKR DPEIVIARDT DSELSSSEEE EEEEDNYPFS ESEEEDEAVK NGGKIELEKN KAKGKAPITV KLIKKVCKVC KQPGHEAGFK GATYIDCPMK
101: PCFLCKMPGH TTMSCPHRVV TDHGILPTSH RNTKNPIDFV FKRQLQPRIP PIKPKYVIPD QVHCAVIRYH SRRVTCLEFH PTKNNILLSG DKKGQIGVWD
201: FGKVYEKNVY GNIHSVQVNN MRFSPTNDDM VYSASSDGTI GYTDLETGTS STLLNLNPDG WQGANSWKML YGMDINSEKG VVLAADNFGF LHMIDHRTNN
301: STGEPILIHK QGSKVCGLDC NPVQPELLLS CGNDHFARIW DMRKLQPKAS LHDLAHKRVV NSAYFSPSSG TKILTTCQDN RIRIWDSIFG NLDLPSREIV
401: HSNDFNRHLT PFKAEWDPKD TSESLIVIGR YISENYNGTA LHPIDFIDAS NGQLVAEVMD PNITTITPVN KLHPRDDVLA SGSSRSLFIW RPQDNTEMVE
501: EKKDKKIIIC YGDSKKKGKK QKRGSDDEDD EDDIFSSKGK NIKVNKYQAK TTKKTKT

Arabidopsis Description

DDB2Protein DAMAGED DNA-BINDING 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.