CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11182
KRH21072
KRH21073
KRH25071
KRH42547
KRH43086
KRH58640
KRH59212
KRH59213

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58760.1	KRH25071	AT4G05420.1	16792691
AT5G58760.1	KRH43086	AT4G05420.1	16792691
AT5G58760.1	KRH59212	AT4G05420.1	16792691
AT5G58760.1	KRH59213	AT4G05420.1	16792691
AT5G58760.1	KRH25071	AT4G05420.1	18551167
AT5G58760.1	KRH43086	AT4G05420.1	18551167
AT5G58760.1	KRH59212	AT4G05420.1	18551167
AT5G58760.1	KRH59213	AT4G05420.1	18551167
AT5G58760.1	KRH11182	AT5G46210.1	18551167
AT5G58760.1	KRH21072	AT5G46210.1	18551167
AT5G58760.1	KRH21073	AT5G46210.1	18551167
AT5G58760.1	KRH42547	AT5G46210.1	18551167
AT5G58760.1	KRH58640	AT5G46210.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72670	Soybean	cytosol	45.28	96.21
KRH72668	Soybean	nucleus	48.84	94.16
VIT_06s0004g06550.t01	Wine grape	nucleus	71.48	71.74
CDY32686	Canola	nucleus	68.09	70.09
Bra020355.1-P	Field mustard	nucleus	68.09	69.84
CDY02834	Canola	nucleus	68.27	69.26
AT5G58760.1	Thale cress	nucleus	68.63	69.12
Solyc09g031610.2.1	Tomato	nucleus	64.35	61.5
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	59.18	60.58
PGSC0003DMT400056773	Potato	nucleus	15.51	60.0
TraesCS3D01G054200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	59.89	58.95
TraesCS3A01G054700.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	59.89	58.74
Os01t0141700-01	Rice	nucleus	60.96	58.66
TraesCS3B01G066200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	60.07	58.51
EES00342	Sorghum	cytosol, mitochondrion, nucleus, peroxisome	59.0	56.78
Zm00001d008597_P001	Maize	mitochondrion, nucleus	55.79	54.91

Protein Annotations

EntrezGene:100527914	MapMan:14.6.1.3.2	Gene3D:2.130.10.10	Gene3D:4.10.60.10	EMBL:ACUP02009041	ncoils:Coil
InterPro:DDB2	EnsemblPlantsGene:GLYMA_14G193200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009987	GO:GO:0080008	UniProt:I1MBA5	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlants:KRH17028	ProteinID:KRH17028	ProteinID:KRH17028.1	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR15169	PANTHER:PTHR15169:SF0	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000233B298	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:45792468..45797832

Molecular Weight (calculated)

62961.7 Da

IEP (calculated)

7.349

GRAVY (calculated)

-0.624

Length

561 amino acids

Sequence
(BLAST)

001: MAPVTRRTSF PKVLIERDSD SEQSSSEEEE ILEEEEEEEE EEEEEEEVGV STANEKAEKL DLGSDANRKG KAPITISLKK VCKVCKKPGH EAGFKGATYV
101: DCPMKPCFLC KMPGHTTLTC PHRVSTEHGV VPAPRRKTCK PLDYVFERQL RPSLPSIKPK YVIPDQVNCA VIRYHSRRVT CLEFHPTKNN ILLSGDKKGQ
201: LGVWDFGKVY EKVVYGNIHS CLVNNMRFNP TNDCMVYSAS SDGTISCTDL ETGISSSPMN LNPDGWQGPN TWKMLNGMDI NSEKGLVLVA DSFGFLHMVD
301: MRSNNRSGDA ILIHKKGKVV GIHCNPIQPD IFLTCGNDHF ARIWDLRQIK AGSSLYDLKH KRVVNSAYFS PISGTKILTT SQDNRLRVWD SIFGNMDSPS
401: REIVHSHDFN RHLTPFKAEW DPKDPSESLA VVGRYISENY NGAALHPIDF IDTSTGQLVA EVMDPNITTI SPVNKLHPRD DILATGSSRS LFIWKPKEKS
501: ELVEEKDERK IVVCGKAEKK RGKKNGNISD ESDDEGFMSK SKKSKTKKTE SKLSRFTKDN C

Best Arabidopsis Sequence Match ( AT5G58760.1 )
(BLAST)

001: MSSTRSRRKR DPEIVIARDT DSELSSSEEE EEEEDNYPFS ESEEEDEAVK NGGKIELEKN KAKGKAPITV KLIKKVCKVC KQPGHEAGFK GATYIDCPMK
101: PCFLCKMPGH TTMSCPHRVV TDHGILPTSH RNTKNPIDFV FKRQLQPRIP PIKPKYVIPD QVHCAVIRYH SRRVTCLEFH PTKNNILLSG DKKGQIGVWD
201: FGKVYEKNVY GNIHSVQVNN MRFSPTNDDM VYSASSDGTI GYTDLETGTS STLLNLNPDG WQGANSWKML YGMDINSEKG VVLAADNFGF LHMIDHRTNN
301: STGEPILIHK QGSKVCGLDC NPVQPELLLS CGNDHFARIW DMRKLQPKAS LHDLAHKRVV NSAYFSPSSG TKILTTCQDN RIRIWDSIFG NLDLPSREIV
401: HSNDFNRHLT PFKAEWDPKD TSESLIVIGR YISENYNGTA LHPIDFIDAS NGQLVAEVMD PNITTITPVN KLHPRDDVLA SGSSRSLFIW RPQDNTEMVE
501: EKKDKKIIIC YGDSKKKGKK QKRGSDDEDD EDDIFSSKGK NIKVNKYQAK TTKKTKT

Arabidopsis Description

DDB2Protein DAMAGED DNA-BINDING 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.