Factsheet for PGSC0003DMT400056773

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009595

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58760.1	PGSC0003DMT400009595	AT4G05420.1	16792691
AT5G58760.1	PGSC0003DMT400009595	AT4G05420.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72670	Soybean	cytosol	58.62	32.2
Solyc09g031610.2.1	Tomato	nucleus	90.34	22.32
VIT_06s0004g06550.t01	Wine grape	nucleus	62.76	16.28
KRH17028	Soybean	nucleus	60.0	15.51
AT5G58760.1	Thale cress	nucleus	59.31	15.44
CDY32686	Canola	nucleus	57.93	15.41
Bra020355.1-P	Field mustard	nucleus	57.93	15.36
CDY02834	Canola	nucleus	57.24	15.01
TraesCS3B01G066200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	53.1	13.37
TraesCS3D01G054200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	52.41	13.33
Os01t0141700-01	Rice	nucleus	53.1	13.21
TraesCS3A01G054700.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	51.03	12.94
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	48.28	12.77
EES00342	Sorghum	cytosol, mitochondrion, nucleus, peroxisome	49.66	12.35
Zm00001d008597_P001	Maize	mitochondrion, nucleus	45.52	11.58
KRH72668	Soybean	nucleus	1.38	0.69

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:DDB2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0080008	InterPro:IPR015943	UniProt:M1BZV8	EnsemblPlantsGene:PGSC0003DMG400022078
PGSC:PGSC0003DMG400022078	EnsemblPlants:PGSC0003DMT400056773	PANTHER:PTHR15169	PANTHER:PTHR15169:SF0	UniParc:UPI00029636FA	InterPro:WD40/YVTN_repeat-like_dom_sf
SEG:seg	:	:	:	:	:

Description

DNA damage-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022078]

Coordinates

chr9:-:39674919..39684418

Molecular Weight (calculated)

16357.3 Da

IEP (calculated)

8.825

GRAVY (calculated)

-0.679

Length

145 amino acids

Sequence
(BLAST)

001: MCCYFGQDSS ESLVVIGRYI SENYDGAALH PIDFINISTG QLVAEVMDPN ITTISSVNKL HPREDILASG SSRSLFIWRP KKLDIALPRE EKRMVLCGEV
101: SKKRNKKHGD ESDDDSENDI FRSKDNSLKQ KKLASKSSSY KSRRS

Best Arabidopsis Sequence Match ( AT5G58760.1 )
(BLAST)

001: MSSTRSRRKR DPEIVIARDT DSELSSSEEE EEEEDNYPFS ESEEEDEAVK NGGKIELEKN KAKGKAPITV KLIKKVCKVC KQPGHEAGFK GATYIDCPMK
101: PCFLCKMPGH TTMSCPHRVV TDHGILPTSH RNTKNPIDFV FKRQLQPRIP PIKPKYVIPD QVHCAVIRYH SRRVTCLEFH PTKNNILLSG DKKGQIGVWD
201: FGKVYEKNVY GNIHSVQVNN MRFSPTNDDM VYSASSDGTI GYTDLETGTS STLLNLNPDG WQGANSWKML YGMDINSEKG VVLAADNFGF LHMIDHRTNN
301: STGEPILIHK QGSKVCGLDC NPVQPELLLS CGNDHFARIW DMRKLQPKAS LHDLAHKRVV NSAYFSPSSG TKILTTCQDN RIRIWDSIFG NLDLPSREIV
401: HSNDFNRHLT PFKAEWDPKD TSESLIVIGR YISENYNGTA LHPIDFIDAS NGQLVAEVMD PNITTITPVN KLHPRDDVLA SGSSRSLFIW RPQDNTEMVE
501: EKKDKKIIIC YGDSKKKGKK QKRGSDDEDD EDDIFSSKGK NIKVNKYQAK TTKKTKT

Arabidopsis Description

DDB2Protein DAMAGED DNA-BINDING 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.