Factsheet for TraesCS3A01G054700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 2
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G473400.1
TraesCS1D01G445700.1
TraesCS3A01G210100.2
TraesCS3B01G240600.1
TraesCS5A01G425300.1
TraesCS5B01G427400.1
TraesCS5D01G433700.3
TraesCSU01G002300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58760.1	TraesCS1B01G473400.1	AT4G05420.1	16792691
AT5G58760.1	TraesCS1D01G445700.1	AT4G05420.1	16792691
AT5G58760.1	TraesCS3A01G210100.2	AT4G05420.1	16792691
AT5G58760.1	TraesCS3B01G240600.1	AT4G05420.1	16792691
AT5G58760.1	TraesCSU01G002300.1	AT4G05420.1	16792691
AT5G58760.1	TraesCS1B01G473400.1	AT4G05420.1	18551167
AT5G58760.1	TraesCS1D01G445700.1	AT4G05420.1	18551167
AT5G58760.1	TraesCS3A01G210100.2	AT4G05420.1	18551167
AT5G58760.1	TraesCS3B01G240600.1	AT4G05420.1	18551167
AT5G58760.1	TraesCSU01G002300.1	AT4G05420.1	18551167
AT5G58760.1	TraesCS5A01G425300.1	AT5G46210.1	18551167
AT5G58760.1	TraesCS5B01G427400.1	AT5G46210.1	18551167
AT5G58760.1	TraesCS5D01G433700.3	AT5G46210.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G054200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	97.9	98.25
TraesCS3B01G066200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	96.15	95.49
Os01t0141700-01	Rice	nucleus	82.17	80.62
EES00342	Sorghum	cytosol, mitochondrion, nucleus, peroxisome	81.64	80.1
Zm00001d008597_P001	Maize	mitochondrion, nucleus	75.0	75.26
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	61.71	64.42
KRH72670	Soybean	cytosol	29.2	63.26
VIT_06s0004g06550.t01	Wine grape	nucleus	59.27	60.64
KRH17028	Soybean	nucleus	58.74	59.89
AT5G58760.1	Thale cress	nucleus	56.47	57.99
KRH72668	Soybean	nucleus	29.37	57.73
CDY32686	Canola	nucleus	54.9	57.61
Bra020355.1-P	Field mustard	nucleus	55.07	57.59
CDY02834	Canola	nucleus	54.72	56.6
Solyc09g031610.2.1	Tomato	nucleus	53.85	52.47
PGSC0003DMT400056773	Potato	nucleus	12.94	51.03

Protein Annotations

MapMan:14.6.1.3.2	Gene3D:2.130.10.10	ncoils:Coil	InterPro:DDB2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010224	GO:GO:0080008
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR15169	PANTHER:PTHR15169:SF0	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS3A01G054700
EnsemblPlants:TraesCS3A01G054700.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:31948399..31952032

Molecular Weight (calculated)

63193.4 Da

IEP (calculated)

8.081

GRAVY (calculated)

-0.653

Length

572 amino acids

Sequence
(BLAST)

001: MAAPARARFV HNRSRRRAAD ESSDEQQDAS SSSSSDDDGG DEEEEEMEVE GSEEEEEEAV ADEPAARKSP AAAGRGGRKG PITISLKKVC KVCKKTGHEA
101: GFKGAVYIDC PMKPCFLCKM PGHTTLTCPH RVAMEHGVIP APRRNTNTSL DYVFQSQVKG KISMVKPRFL VPNQLECDNI KFHQRRVTCL EFHPTKNNVL
201: LSGDKKGLLG IWDYVKLHEK ITYDSVHSCI LNSMKFDTAN DGVLYTASSD GTISSTDLDT GIGSPLLNLN PDGWSGPSTW RMIYGMDLNT EKGLLLVADS
301: FGFLYLLDRR SKERIGQPVL IHKKGSKVTG LHCNPAQPEV LLSSGNDHFA RIWDTRKLDP KSALASLAHG RVVNSGYFSP RSGNKIMTTC QDNRIRVWDY
401: IFGNLESPSR EIVHSHDFNR HLTPFKAEWD PKDYSETVAV IGRYISENYN GVALHPIDFI DTSTGKLLAE VMDPDITTIS PVNKLHPQDD ILATGSSRSI
501: FIWKPKNDID PTEERTSQKV KEYVYGSGSR KKPDGKNDNS SGDDSDGGGG KSKKAKKTRF THTAKGKGKS KA

Best Arabidopsis Sequence Match ( AT5G58760.1 )
(BLAST)

001: MSSTRSRRKR DPEIVIARDT DSELSSSEEE EEEEDNYPFS ESEEEDEAVK NGGKIELEKN KAKGKAPITV KLIKKVCKVC KQPGHEAGFK GATYIDCPMK
101: PCFLCKMPGH TTMSCPHRVV TDHGILPTSH RNTKNPIDFV FKRQLQPRIP PIKPKYVIPD QVHCAVIRYH SRRVTCLEFH PTKNNILLSG DKKGQIGVWD
201: FGKVYEKNVY GNIHSVQVNN MRFSPTNDDM VYSASSDGTI GYTDLETGTS STLLNLNPDG WQGANSWKML YGMDINSEKG VVLAADNFGF LHMIDHRTNN
301: STGEPILIHK QGSKVCGLDC NPVQPELLLS CGNDHFARIW DMRKLQPKAS LHDLAHKRVV NSAYFSPSSG TKILTTCQDN RIRIWDSIFG NLDLPSREIV
401: HSNDFNRHLT PFKAEWDPKD TSESLIVIGR YISENYNGTA LHPIDFIDAS NGQLVAEVMD PNITTITPVN KLHPRDDVLA SGSSRSLFIW RPQDNTEMVE
501: EKKDKKIIIC YGDSKKKGKK QKRGSDDEDD EDDIFSSKGK NIKVNKYQAK TTKKTKT

Arabidopsis Description

DDB2Protein DAMAGED DNA-BINDING 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.