Factsheet for VIT_06s0004g06550.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g03710.t01
VIT_10s0003g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58760.1	VIT_10s0003g04360.t01	AT4G05420.1	16792691
AT5G58760.1	VIT_10s0003g04360.t01	AT4G05420.1	18551167
AT5G58760.1	VIT_10s0003g03710.t01	AT5G46210.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72670	Soybean	cytosol	34.7	73.48
KRH17028	Soybean	nucleus	71.74	71.48
CDY32686	Canola	nucleus	69.05	70.83
Bra020355.1-P	Field mustard	nucleus	69.05	70.57
KRH72668	Soybean	nucleus	36.49	70.1
CDY02834	Canola	nucleus	69.23	69.98
AT5G58760.1	Thale cress	nucleus	68.16	68.4
Solyc09g031610.2.1	Tomato	nucleus	68.52	65.25
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	62.08	63.32
PGSC0003DMT400056773	Potato	nucleus	16.28	62.76
Os01t0141700-01	Rice	nucleus	62.08	59.52
TraesCS3D01G054200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	60.64	59.47
TraesCS3A01G054700.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	60.64	59.27
TraesCS3B01G066200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	61.0	59.2
EES00342	Sorghum	cytosol, mitochondrion, nucleus, peroxisome	60.47	57.98
Zm00001d008597_P001	Maize	mitochondrion, nucleus	56.35	55.26

Protein Annotations

EntrezGene:100250121	wikigene:100250121	MapMan:14.6.1.3.2	Gene3D:2.130.10.10	UniProt:A5BX89	EMBL:AM474513
ProteinID:CAN61895	ProteinID:CAN61895.1	ProteinID:CBI15959	ProteinID:CBI15959.3	InterPro:DDB2	EMBL:FN594951
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009628
GO:GO:0009987	GO:GO:0010224	GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EntrezGene:LOC100250121	wikigene:LOC100250121	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR15169	PANTHER:PTHR15169:SF0	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0001521DE6	ArrayExpress:VIT_06s0004g06550
EnsemblPlantsGene:VIT_06s0004g06550	EnsemblPlants:VIT_06s0004g06550.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_002279214	RefSeq:XP_002279214.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:7249262..7254470

Molecular Weight (calculated)

62702.2 Da

IEP (calculated)

7.851

GRAVY (calculated)

-0.619

Length

559 amino acids

Sequence
(BLAST)

001: MAPRTRRGSF PRVVIERDTE SEKSSSSEEE EDPEPEVQEE EESEELAEVE NGENVEEGLG SKKKERVPIT IALTKVCKVC KRKGHEAGFK GATYIDCPMK
101: PCFLCKMPGH TTMTCPHKVA TEHGVIPAPN RNTRSSLDYV FRRQLQPDIP AIKTAFIVPN QVDCAVIRYH SRRVTCLEFH PTNNNILLSG DKKGQLGVWD
201: YNKVHEKTVY GNIHHCILNN MRFKPTNDET IYAASSDGTI SCTDLETGIS SSLMNLNPNG WEGPSTWRML YGMDINSEKG LVLVADNFGF LYLVDTRSNN
301: QTGEAILIHK KGSKVVGLHC NPLQPELLLS CGNDHFARIW DMRRLEAGSS LHNLPHGRVV NAAYFSPQSG CKILTTSQDN RIRVWDSIFG NLNSPSREIV
401: HSHDFNRHLT PFRAEWDPKD PAESLVVVGR YISENYNGAA LHPIDFIDIS TGQLVAEVMD PNITTISPVN KLHPRDDVLA SGSSRSLFIW RPRDKSEPVQ
501: QKNEKKIVLC ASEKKTRRKF GGVDSDNDSD DDTFSSKGKN FKSKKLGSKP TPKSLRTKR

Best Arabidopsis Sequence Match ( AT5G58760.1 )
(BLAST)

001: MSSTRSRRKR DPEIVIARDT DSELSSSEEE EEEEDNYPFS ESEEEDEAVK NGGKIELEKN KAKGKAPITV KLIKKVCKVC KQPGHEAGFK GATYIDCPMK
101: PCFLCKMPGH TTMSCPHRVV TDHGILPTSH RNTKNPIDFV FKRQLQPRIP PIKPKYVIPD QVHCAVIRYH SRRVTCLEFH PTKNNILLSG DKKGQIGVWD
201: FGKVYEKNVY GNIHSVQVNN MRFSPTNDDM VYSASSDGTI GYTDLETGTS STLLNLNPDG WQGANSWKML YGMDINSEKG VVLAADNFGF LHMIDHRTNN
301: STGEPILIHK QGSKVCGLDC NPVQPELLLS CGNDHFARIW DMRKLQPKAS LHDLAHKRVV NSAYFSPSSG TKILTTCQDN RIRIWDSIFG NLDLPSREIV
401: HSNDFNRHLT PFKAEWDPKD TSESLIVIGR YISENYNGTA LHPIDFIDAS NGQLVAEVMD PNITTITPVN KLHPRDDVLA SGSSRSLFIW RPQDNTEMVE
501: EKKDKKIIIC YGDSKKKGKK QKRGSDDEDD EDDIFSSKGK NIKVNKYQAK TTKKTKT

Arabidopsis Description

DDB2Protein DAMAGED DNA-BINDING 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.