Factsheet for VIT_10s0003g04360.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0017g01870.t01
VIT_03s0038g02430.t01
VIT_03s0063g02480.t01
VIT_04s0008g03060.t01
VIT_05s0020g01570.t01
VIT_05s0077g02310.t01
VIT_06s0004g00730.t01
VIT_06s0004g06550.t01
VIT_07s0104g00900.t01
VIT_08s0007g00490.t01
VIT_09s0002g09150.t01
VIT_10s0003g03710.t01
VIT_11s0016g01730.t01
VIT_11s0016g01910.t01
VIT_12s0028g03140.t01
VIT_12s0055g00900.t01
VIT_15s0021g02350.t01
VIT_15s0048g02140.t01
VIT_16s0013g01550.t01
VIT_18s0001g09100.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05420.1	VIT_18s0001g09100.t01	AT1G19750.1	20622147
AT4G05420.1	VIT_08s0007g00490.t01	AT1G65030.1	18223036
AT4G05420.1	VIT_09s0002g09150.t01	AT1G80670.1	18223036
AT4G05420.1	VIT_12s0055g00900.t01	AT1G80670.1	18223036
AT4G05420.1	VIT_11s0016g01910.t01	AT2G19430.1	18223036
AT4G05420.1	VIT_06s0004g00730.t01	AT3G13550.1	16844902
AT4G05420.1	VIT_07s0104g00900.t01	AT4G03020.1	21798944
AT4G05420.1	VIT_15s0048g02140.t01	AT4G10180.1	16792691
AT4G05420.1	VIT_05s0020g01570.t01	AT4G15730.1	21798944
AT4G05420.1	VIT_05s0077g02310.t01	AT4G15900.1	18223036
AT4G05420.1	VIT_03s0017g01870.t01	AT4G28450.1	18223036
AT4G05420.1	VIT_12s0028g03140.t01	AT4G28450.1	18223036
AT4G05420.1	VIT_11s0016g01730.t01	AT4G29830.1	18223036
AT4G05420.1	VIT_04s0008g03060.t01	AT4G31160.1	18552200
AT4G05420.1	VIT_15s0021g02350.t01	AT4G31160.1	18552200
AT4G05420.1	VIT_03s0063g02480.t01	AT4G34460.1	18223036
AT4G05420.1	VIT_03s0038g02430.t01	AT4G35050.1	18223036
AT4G05420.1	VIT_10s0003g03710.t01	AT5G46210.1	16792691
AT4G05420.1	VIT_10s0003g03710.t01	AT5G46210.1	16844902
AT4G05420.1	VIT_10s0003g03710.t01	AT5G46210.1	18223036
AT4G05420.1	VIT_10s0003g03710.t01	AT5G46210.1	18551167
AT4G05420.1	VIT_16s0013g01550.t01	AT5G58230.1	21240189
AT4G05420.1	VIT_06s0004g06550.t01	AT5G58760.1	16792691
AT4G05420.1	VIT_06s0004g06550.t01	AT5G58760.1	18551167
AT4G05420.1	VIT_06s0004g06550.t01	AT5G58760.1	21240189
AT4G21100.1	VIT_10s0003g03710.t01	AT5G46210.1	16792691

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59213	Soybean	cytosol, plasma membrane, plastid	43.25	94.2
KRH43086	Soybean	nucleus	17.45	93.6
CDY70585	Canola	plastid	30.3	92.96
Solyc02g021650.2.1	Tomato	nucleus	92.93	92.42
KRH25071	Soybean	nucleus	50.41	91.96
AT4G05420.1	Thale cress	cytosol, nucleus, peroxisome	90.45	90.53
Bra029577.1-P	Field mustard	nucleus, peroxisome, plastid	89.72	89.96
CDY68484	Canola	cytosol, endoplasmic reticulum, vacuole	43.99	89.53
KRH59212	Soybean	cytosol, nucleus	43.8	89.49
CDY69266	Canola	nucleus	44.9	89.23
GSMUA_Achr8P07200_001	Banana	cytosol, nucleus, plasma membrane	88.89	88.89
CDY69930	Canola	plastid	38.02	88.27
AT4G21100.1	Thale cress	nucleus	87.79	87.87
CDY57060	Canola	cytosol, nucleus, plasma membrane	85.95	84.86
KXG22678	Sorghum	nucleus	83.1	83.1
TraesCSU01G002300.1	Wheat	golgi, plastid	83.1	83.03
TraesCS1B01G473400.1	Wheat	nucleus	83.1	83.03
TraesCS1D01G445700.1	Wheat	unclear	83.01	82.94
Zm00001d039165_P046	Maize	nucleus	83.2	82.89
CDX76416	Canola	cytosol	85.58	82.62
HORVU1Hr1G094530.1	Barley	nucleus, plastid	83.1	79.11
Zm00001d009745_P023	Maize	cytosol, nucleus, plasma membrane, plastid	79.34	78.62
Bra020884.1-P	Field mustard	cytosol	85.49	72.62
TraesCS3A01G210100.2	Wheat	nucleus	66.39	66.51
TraesCS3B01G240600.1	Wheat	cytosol	62.72	66.05
HORVU3Hr1G050820.11	Barley	plastid	66.85	64.31
HORVU7Hr1G056620.1	Barley	cytosol	6.89	64.1
HORVU7Hr1G056610.1	Barley	cytosol	9.83	53.77
CDY50606	Canola	golgi, mitochondrion, plasma membrane	14.97	51.58
PGSC0003DMT400009595	Potato	nucleus	11.29	47.13
CDY54326	Canola	cytosol	9.0	42.79
VIT_15s0107g00220.t01	Wine grape	cytosol	3.49	26.21
VIT_15s0024g01220.t01	Wine grape	cytosol	2.3	22.94
VIT_00s0317g00100.t01	Wine grape	endoplasmic reticulum	23.32	20.92
VIT_15s0107g00230.t01	Wine grape	nucleus	2.48	20.77
VIT_08s0007g07150.t01	Wine grape	cytosol, nucleus, plasma membrane	18.82	15.04

Protein Annotations

EntrezGene:100256664	wikigene:100256664	MapMan:14.6.1.3.1	MapMan:19.2.2.8.3.2	Gene3D:2.130.10.10	MapMan:26.1.1.3.2
Gene3D:3.30.980.30	ProteinID:CCB55836	ProteinID:CCB55836.1	InterPro:Cleavage/polyA-sp_fac_asu_C	ncoils:Coil	InterPro:DDB1
UniProt:F6HLW1	EMBL:FN595992	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031461	GO:GO:0043161
InterPro:IPR015943	EntrezGene:LOC100256664	wikigene:LOC100256664	PFAM:PF03178	PFAM:PF10433	PANTHER:PTHR10644
PANTHER:PTHR10644:SF3	SUPFAM:SSF50978	UniParc:UPI00015CB038	ArrayExpress:VIT_10s0003g04360	EnsemblPlantsGene:VIT_10s0003g04360	EnsemblPlants:VIT_10s0003g04360.t01
unigene:Vvi.12451	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002280735	RefSeq:XP_002280735.1	RefSeq:XP_002280744
RefSeq:XP_002280744.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:7492804..7542892

Molecular Weight (calculated)

121459.0 Da

IEP (calculated)

4.959

GRAVY (calculated)

-0.103

Length

1089 amino acids

Sequence
(BLAST)

0001: MSVWNYVVTA HKPTNVTHSC VGNFTGPQEL NLIIAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDAENSEVI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLY GCSKPTIVVL YQDNKDARHV KTYEVALKDK
0201: DFVEGPWAQN NLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDADGSRYLL GDHAGLLHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAFVYVGSSY GDSQLIKIHL QPDAKGSYVE VLERYVNLGP IVDFCVVDLE RQGQGQVVTC SGAYKDGSLR IVRNGIGINE QASVELQGIK
0401: GMWSLRSSTD DPHDTFLVVS FISETRILAM NLEDELEETE IEGFCSQVQT LFCHDAVYDQ LVQVTSSSVR LVGSTSRELR NEWKAPSGYS VNVATANATQ
0501: VLLATGGGHL VYLEIGDGTL TEVKHAQLEY DISCLDINPI GENPNFSQLA AVGMWTDISV RIFSLPDLNL ITKEYLGGEI IPRSVLLCSF EGIPYLLCAL
0601: GDGHLLNFLL NMSTGELTDR KKVSLGTQPI TLRTFSSKNT THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIAKE GDLTIGTIDD
0701: IQKLHIRSIP LGEHARRICH QEQSRTFAIC SLKYNQSSTE DSEMHFIRLL DDQTFEFIST YPLDTFEYGC SILSCSFSDD SNVYYCVGTA YVLPEENEPT
0801: KGRILVFIVE DGKLQLIAEK ETKGAVYSLN AFNGKLLAAI NQKIQLYKWM LRDDGTRELQ SESGHHGHIL ALYVQTRGDF IVVGDLMKSI SLLIYKHEEG
0901: AIEERARDYN ANWMSAVEIL DDDIYLGAEN NFNIFTVRKN SEGATDEERG RLEVVGEYHL GEFVNRFRHG SLVMRLPDSD VGQIPTVIFG TVNGVIGVIA
1001: SLPHDQYVFL EKLQANLRKV IKGVGGLSHE QWRSFNNEKK TVDAKNFLDG DLIETFLDLN RTRMDEISKA MAVSVEELCK RVEELTRLH

Best Arabidopsis Sequence Match ( AT4G05420.1 )
(BLAST)

0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
0301: SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR DEWHAPAGFT VNVATANASQ
0501: VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP LGEHARRICH QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
0901: IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS
1001: LPQEQYTFLE KLQSSLRKVI KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR VEELTRLH

Arabidopsis Description

DDB1ADDB1A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.