Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_10s0003g04360.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G28450.1 | VIT_10s0003g04360.t01 | AT4G05420.1 | 18223036 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0238900-01 | Rice | cytosol, nucleus | 63.46 | 11.91 |
| VIT_12s0028g03140.t01 | Wine grape | nucleus | 80.77 | 9.29 |
| Solyc07g053660.2.1 | Tomato | nucleus | 76.92 | 8.85 |
| PGSC0003DMT400024304 | Potato | nucleus | 76.92 | 8.85 |
| KRH15046 | Soybean | nucleus | 71.15 | 8.33 |
| KRH73094 | Soybean | nucleus | 71.15 | 8.19 |
| GSMUA_Achr8P16000_001 | Banana | nucleus | 69.23 | 7.96 |
| Zm00001d034883_P003 | Maize | nucleus, plasma membrane | 63.46 | 7.3 |
| AT4G28450.1 | Thale cress | nucleus | 63.46 | 7.3 |
| EES02165 | Sorghum | nucleus | 63.46 | 7.3 |
| EER93077 | Sorghum | nucleus | 63.46 | 7.3 |
| TraesCS3A01G160900.1 | Wheat | nucleus | 59.62 | 6.86 |
| TraesCS3B01G191500.1 | Wheat | nucleus | 59.62 | 6.86 |
| TraesCS3D01G168100.1 | Wheat | nucleus | 59.62 | 6.86 |
| Bra024202.1-P | Field mustard | nucleus | 55.77 | 6.42 |
| CDY29906 | Canola | nucleus | 55.77 | 6.4 |
| CDX92872 | Canola | nucleus | 55.77 | 6.4 |
Protein Annotations
| MapMan:35.2 | ProteinID:CCB58044 | ProteinID:CCB58044.1 | UniProt:F6HTN4 | EMBL:FN596248 | GO:GO:0000462 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0032040 | GO:GO:0080008 | PANTHER:PTHR22851 |
| UniParc:UPI000210916D | ArrayExpress:VIT_03s0017g01870 | EnsemblPlantsGene:VIT_03s0017g01870 | EnsemblPlants:VIT_03s0017g01870.t01 | RefSeq:XP_003631755 | RefSeq:XP_003631755.1 |
Description
No Description!
Coordinates
chr3:-:18274376..18274980
Molecular Weight (calculated)
5844.8 Da
IEP (calculated)
7.619
GRAVY (calculated)
-0.521
Length
52 amino acids
Sequence
(BLAST)
(BLAST)
1: MKPLAVHVCK IAFWGADHQW DGNLFATAGA QVDIWNHNRS QPDKQASNRI AE
001: MKIKTLSRSV DEYTRERSQD LQRVFHNFDP SLRPMEKAVE YQRALTAAKL EKIFARPFVG AMDGHRDGVS CMAKNPNYLK GIFSASMDGD IRLWDISSRR
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE
Arabidopsis Description
AT4g28450/F20O9_130 [Source:UniProtKB/TrEMBL;Acc:Q93VK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.