Factsheet for VIT_12s0028g03140.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28450.1	VIT_10s0003g04360.t01	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024304	Potato	nucleus	82.74	82.74
KRH73094	Soybean	nucleus	82.52	82.52
Solyc07g053660.2.1	Tomato	nucleus	82.3	82.3
GSMUA_Achr8P16000_001	Banana	nucleus	81.42	81.42
KRH15046	Soybean	nucleus	79.87	81.31
VIT_03s0017g01870.t01	Wine grape	cytosol	9.29	80.77
AT4G28450.1	Thale cress	nucleus	80.09	80.09
CDX92872	Canola	nucleus	78.32	78.15
Bra024202.1-P	Field mustard	nucleus	77.88	77.88
CDY29906	Canola	nucleus	77.88	77.7
EES02165	Sorghum	nucleus	77.65	77.65
Zm00001d034883_P003	Maize	nucleus, plasma membrane	77.43	77.43
EER93077	Sorghum	nucleus	77.21	77.21
TraesCS3D01G168100.1	Wheat	nucleus	76.11	76.11
TraesCS3A01G160900.1	Wheat	nucleus	75.66	75.66
TraesCS3B01G191500.1	Wheat	nucleus	75.22	75.22
Os01t0238900-01	Rice	cytosol, nucleus	46.02	75.09

Protein Annotations

EntrezGene:100260774	wikigene:100260774	MapMan:17.1.3.2.1.8	Gene3D:2.130.10.10	ProteinID:CBI21898	ProteinID:CBI21898.3
ncoils:Coil	UniProt:E0CTI3	EMBL:FN595235	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000462	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0032040
GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100260774	wikigene:LOC100260774
PFAM:PF00400	PFAM:PF04158	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22851	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sof1	TIGR:TC58421	TIGR:TC63146
UniParc:UPI00015CA272	ArrayExpress:VIT_12s0028g03140	EnsemblPlantsGene:VIT_12s0028g03140	EnsemblPlants:VIT_12s0028g03140.t01	unigene:Vvi.4249	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002276985	RefSeq:XP_002276985.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:3919806..3931756

Molecular Weight (calculated)

51670.5 Da

IEP (calculated)

9.850

GRAVY (calculated)

-0.606

Length

452 amino acids

Sequence
(BLAST)

001: MKVKVISRST DEFTRERSQD LQRVFRNFDP NLRKQEKAVE YVRALNAAKL DKVFARPFIG AMDGHIDSIS CMAKNPNYLK GIFSGSMDGD IRLWDIASRR
101: TVCQFPGHQG AVRGLTASTD GRILVSCGTD CTVRLWNVPV ATISDSDDSS DNSMKPLAVH VWKNAFWGVD HQWDGNLFAT AGAQVDIWDH NRSQPVNTFQ
201: WGNDSVIAVR FNPGEPDILA ASASDRSLIL YDLRMSSPAR KLIMRTKTNS ISWNPMEPMN FTAANEDCNC YSYDARKLDE AKCVHKDHVS AVMDIDYSPT
301: GREFVTGSYD RTVRIFQYNG GHSREIYHTK RMQRVFCVKF TCDASYVISG SDDTNLRLWK AKASEQLGVL LPRERKKHEY HEAVKNRYKH LPEVKRIVRH
401: RHLPKPIFKA AALRRTMTEA ERRKEEKRKA HSAPGSISTE PLRKRRIIQE VE

Best Arabidopsis Sequence Match ( AT4G28450.1 )
(BLAST)

001: MKIKTLSRSV DEYTRERSQD LQRVFHNFDP SLRPMEKAVE YQRALTAAKL EKIFARPFVG AMDGHRDGVS CMAKNPNYLK GIFSASMDGD IRLWDISSRR
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE

Arabidopsis Description

AT4g28450/F20O9_130 [Source:UniProtKB/TrEMBL;Acc:Q93VK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.