Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g021650.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G28450.1 | Solyc02g021650.2.1 | AT4G05420.1 | 18223036 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400024304 | Potato | nucleus | 98.23 | 98.23 |
| VIT_12s0028g03140.t01 | Wine grape | nucleus | 82.3 | 82.3 |
| KRH73094 | Soybean | nucleus | 79.2 | 79.2 |
| AT4G28450.1 | Thale cress | nucleus | 78.32 | 78.32 |
| KRH15046 | Soybean | nucleus | 76.33 | 77.7 |
| VIT_03s0017g01870.t01 | Wine grape | cytosol | 8.85 | 76.92 |
| CDX92872 | Canola | nucleus | 76.11 | 75.94 |
| GSMUA_Achr8P16000_001 | Banana | nucleus | 75.89 | 75.89 |
| Bra024202.1-P | Field mustard | nucleus | 75.66 | 75.66 |
| CDY29906 | Canola | nucleus | 75.66 | 75.5 |
| Os01t0238900-01 | Rice | cytosol, nucleus | 45.8 | 74.73 |
| Zm00001d034883_P003 | Maize | nucleus, plasma membrane | 73.23 | 73.23 |
| EER93077 | Sorghum | nucleus | 73.01 | 73.01 |
| TraesCS3D01G168100.1 | Wheat | nucleus | 72.79 | 72.79 |
| EES02165 | Sorghum | nucleus | 72.57 | 72.57 |
| TraesCS3A01G160900.1 | Wheat | nucleus | 72.35 | 72.35 |
| TraesCS3B01G191500.1 | Wheat | nucleus | 72.12 | 72.12 |
Protein Annotations
| MapMan:17.1.3.2.1.8 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0000462 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0032040 | GO:GO:0080008 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:K4CFR1 | PFAM:PF00400 | PFAM:PF04158 |
| PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22851 | SMART:SM00320 |
| SUPFAM:SSF50978 | InterPro:Sof1 | EnsemblPlantsGene:Solyc07g053660.2 | EnsemblPlants:Solyc07g053660.2.1 | UniParc:UPI000276C012 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : |
Description
No Description!
Coordinates
chr7:+:62108474..62115206
Molecular Weight (calculated)
51881.7 Da
IEP (calculated)
10.275
GRAVY (calculated)
-0.685
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLKVISRST DDFTRERSQD LQRVFRNFDP SLRHQEKAVE YVRALNAVKL EKIFARPFVG AMDGHIDAVS CMAKNPNHLK GIFSGSMDGD VRLWDLATRR
101: TVRQFPGHQG AVRGLTVSTD GRILVSCGTD CTVRLWKVPV ATLMESDDGS DNSSQPLAVH VWKNAFWGVD HQWDGDLFAT AGAQVDIWNH NRSQPVNSFE
201: WGKDTVTSVR FNPGEPNLLA TSASDRSISI YDLRLSTPAR KVIMSTKTNS IAWNPMEPMN FTAANDDGRC YSYDVRKLNE AKCVHIDHTS SVMDIDYSPT
301: GREFATGSYD RSVRIFKYNG GHSREIYHTK RMQRVFCVKF SCDASYIISG SDDTNLRLWK AKASEQMGVV LPRERKRHEY MEAVKNRYKH LKEVRRIDRH
401: RHLPKPIYKA SRQIREMTES ARRKEERRKA HSAPGSIKNK QLRTKRIVRE VE
101: TVRQFPGHQG AVRGLTVSTD GRILVSCGTD CTVRLWKVPV ATLMESDDGS DNSSQPLAVH VWKNAFWGVD HQWDGDLFAT AGAQVDIWNH NRSQPVNSFE
201: WGKDTVTSVR FNPGEPNLLA TSASDRSISI YDLRLSTPAR KVIMSTKTNS IAWNPMEPMN FTAANDDGRC YSYDVRKLNE AKCVHIDHTS SVMDIDYSPT
301: GREFATGSYD RSVRIFKYNG GHSREIYHTK RMQRVFCVKF SCDASYIISG SDDTNLRLWK AKASEQMGVV LPRERKRHEY MEAVKNRYKH LKEVRRIDRH
401: RHLPKPIYKA SRQIREMTES ARRKEERRKA HSAPGSIKNK QLRTKRIVRE VE
001: MKIKTLSRSV DEYTRERSQD LQRVFHNFDP SLRPMEKAVE YQRALTAAKL EKIFARPFVG AMDGHRDGVS CMAKNPNYLK GIFSASMDGD IRLWDISSRR
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE
Arabidopsis Description
AT4g28450/F20O9_130 [Source:UniProtKB/TrEMBL;Acc:Q93VK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.