Factsheet for Zm00001d034883_P003

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009745_P023
Zm00001d039165_P046

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28450.1	Zm00001d009745_P023	AT4G05420.1	18223036
AT4G28450.1	Zm00001d039165_P046	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93077	Sorghum	nucleus	97.79	97.79
Os01t0238900-01	Rice	cytosol, nucleus	54.2	88.45
TraesCS3A01G160900.1	Wheat	nucleus	87.61	87.61
TraesCS3B01G191500.1	Wheat	nucleus	87.39	87.39
TraesCS3D01G168100.1	Wheat	nucleus	87.39	87.39
GSMUA_Achr8P16000_001	Banana	nucleus	82.3	82.3
VIT_12s0028g03140.t01	Wine grape	nucleus	77.43	77.43
KRH73094	Soybean	nucleus	73.23	73.23
PGSC0003DMT400024304	Potato	nucleus	73.23	73.23
Solyc07g053660.2.1	Tomato	nucleus	73.23	73.23
KRH15046	Soybean	nucleus	71.02	72.3
AT4G28450.1	Thale cress	nucleus	71.68	71.68
CDX92872	Canola	nucleus	69.69	69.54
Bra024202.1-P	Field mustard	nucleus	69.25	69.25
CDY29906	Canola	nucleus	69.25	69.09
VIT_03s0017g01870.t01	Wine grape	cytosol	7.3	63.46

Protein Annotations

EntrezGene:100273845	MapMan:17.1.3.2.1.8	Gene3D:2.130.10.10	UniProt:B4FXR9	EMBL:BT041907	ncoils:Coil
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:ONM11668.1
PFAM:PF00400	PFAM:PF04158	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22851	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sof1	UniParc:UPI00017B7FE1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d034883	EnsemblPlants:Zm00001d034883_P003
EnsemblPlants:Zm00001d034883_T003	SEG:seg	:	:	:	:

Description

nucleotide binding;protein binding

Coordinates

chr1:+:304654641..304663130

Molecular Weight (calculated)

51968.9 Da

IEP (calculated)

9.807

GRAVY (calculated)

-0.661

Length

452 amino acids

Sequence
(BLAST)

001: MRVKVISRST DDYTRERSQD LQKVFRNYDP ALRSQEKAVE YTRALNAAKL EKIFAKPFIG AMDGHIDAVS CMAKNPNHLK AIFSGSMDGD VRLWDIAARK
101: TVCQFPGHQG AVRGLTTSTD GDLLVSCGVD CTVRLWKVPM LKMVDTSERA GDNSQPSAVY TWKHAFWGAD HQWDGNLFAT VGAQVDIWDP DRSEPINSFE
201: WGKDTVLSVR FDPGDSNILI TSGSDRSLTL YDLRMSSPAR KLIMKTRCNS VCWNPREPMN FTAANEDTNC YSFDARKLDE AKIVHKGHVS AVMDIDYSPT
301: GREFVTGSYD RTVRIFNYLG DHSREIYHTK RMQRVFCVKY TYDGTYLVSG SDDTNLRLWK SKASEQLGVL LPRERKKQEY QDALKERYKH LPEVKRIVRH
401: RHLPKPIYKA ANLRRTMIEA ESRKEERRRK HSAPGSMPVQ PFRKRRIIRE VE

Best Arabidopsis Sequence Match ( AT4G28450.1 )
(BLAST)

001: MKIKTLSRSV DEYTRERSQD LQRVFHNFDP SLRPMEKAVE YQRALTAAKL EKIFARPFVG AMDGHRDGVS CMAKNPNYLK GIFSASMDGD IRLWDISSRR
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE

Arabidopsis Description

AT4g28450/F20O9_130 [Source:UniProtKB/TrEMBL;Acc:Q93VK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.