Factsheet for Os01t0238900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0017g01870.t01	Wine grape	cytosol	11.91	63.46
TraesCS3D01G168100.1	Wheat	nucleus	90.25	55.31
TraesCS3A01G160900.1	Wheat	nucleus	90.25	55.31
TraesCS3B01G191500.1	Wheat	nucleus	89.53	54.87
EES02165	Sorghum	nucleus	89.17	54.65
Zm00001d034883_P003	Maize	nucleus, plasma membrane	88.45	54.2
EER93077	Sorghum	nucleus	87.36	53.54
GSMUA_Achr8P16000_001	Banana	nucleus	80.87	49.56
VIT_12s0028g03140.t01	Wine grape	nucleus	75.09	46.02
Solyc07g053660.2.1	Tomato	nucleus	74.73	45.8
PGSC0003DMT400024304	Potato	nucleus	74.37	45.58
KRH73094	Soybean	nucleus	72.2	44.25
AT4G28450.1	Thale cress	nucleus	69.68	42.7
KRH15046	Soybean	nucleus	67.87	42.34
CDX92872	Canola	nucleus	67.87	41.5
Bra024202.1-P	Field mustard	nucleus	67.51	41.37
CDY29906	Canola	nucleus	67.51	41.28

Protein Annotations

MapMan:17.1.3.2.1.8	Gene3D:2.130.10.10	UniProt:A0A0P0V0F4	ProteinID:BAS71254.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0080008
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os01g0238900	EnsemblPlants:Os01t0238900-01	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22851	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI00039396FE	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

OsWD40-11Similar to Protein SOF1. (Os01t0238900-01)

Coordinates

chr1:+:7679009..7685849

Molecular Weight (calculated)

31277.4 Da

IEP (calculated)

8.045

GRAVY (calculated)

-0.232

Length

277 amino acids

Sequence
(BLAST)

001: MRVKVISRST DEFTRERSQD LQKVFRNYDP ALRSQEKAVE YTRALNAAKL EKIFARPFIG AMDGHVDAVS CMAKNPNYLK AIFSGSMDGD IRLWDIAARK
101: TVCQFPGHQG AVRGLATSTD GDLLVSCGVD CTVRLWKVPM LKMVDTNDAI GDASQPSAVY TWKHAFWGVD HQWDGNLFAT VGAQVDIWDQ NRSEPINSFE
201: WGKDTVLSVR FNPGEPDVLI TSASDRSITL YDLRMSSPAR KLIMKTRCNS ICWNPREPMN FTAVRFICFL YMVLTVE

Best Arabidopsis Sequence Match ( AT4G28450.1 )
(BLAST)

001: MKIKTLSRSV DEYTRERSQD LQRVFHNFDP SLRPMEKAVE YQRALTAAKL EKIFARPFVG AMDGHRDGVS CMAKNPNYLK GIFSASMDGD IRLWDISSRR
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE

Arabidopsis Description

AT4g28450/F20O9_130 [Source:UniProtKB/TrEMBL;Acc:Q93VK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.