Factsheet for TraesCS3A01G160900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G473400.1
TraesCS1D01G445700.1
TraesCS3A01G210100.2
TraesCS3B01G240600.1
TraesCSU01G002300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28450.1	TraesCS1B01G473400.1	AT4G05420.1	18223036
AT4G28450.1	TraesCS1D01G445700.1	AT4G05420.1	18223036
AT4G28450.1	TraesCS3A01G210100.2	AT4G05420.1	18223036
AT4G28450.1	TraesCS3B01G240600.1	AT4G05420.1	18223036
AT4G28450.1	TraesCSU01G002300.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G168100.1	Wheat	nucleus	98.89	98.89
TraesCS3B01G191500.1	Wheat	nucleus	97.79	97.79
Os01t0238900-01	Rice	cytosol, nucleus	55.31	90.25
Zm00001d034883_P003	Maize	nucleus, plasma membrane	87.61	87.61
EES02165	Sorghum	nucleus	87.17	87.17
EER93077	Sorghum	nucleus	86.73	86.73
GSMUA_Achr8P16000_001	Banana	nucleus	79.87	79.87
VIT_12s0028g03140.t01	Wine grape	nucleus	75.66	75.66
KRH73094	Soybean	nucleus	72.35	72.35
Solyc07g053660.2.1	Tomato	nucleus	72.35	72.35
PGSC0003DMT400024304	Potato	nucleus	72.35	72.35
KRH15046	Soybean	nucleus	70.58	71.85
AT4G28450.1	Thale cress	nucleus	69.47	69.47
CDX92872	Canola	nucleus	69.47	69.32
Bra024202.1-P	Field mustard	nucleus	69.03	69.03
CDY29906	Canola	nucleus	69.03	68.87
VIT_03s0017g01870.t01	Wine grape	cytosol	6.86	59.62

Protein Annotations

MapMan:17.1.3.2.1.8	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFAM:PF04158	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22851	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sof1	EnsemblPlantsGene:TraesCS3A01G160900
EnsemblPlants:TraesCS3A01G160900.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
TIGR:cd00200	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:161451451..161459545

Molecular Weight (calculated)

52025.9 Da

IEP (calculated)

9.899

GRAVY (calculated)

-0.666

Length

452 amino acids

Sequence
(BLAST)

001: MRVKVISRST DDFTRERSQD LQKVFRNYDP ALRSQEKAVE YTRALNAAKL EKIFARPFIG AMDGHIDAVS CMAKNSNYVK AMFSGSMDGD IRLWDIAARK
101: TVCQFPGHQG AVRGLATSTD GDLLISCGVD CTVRLWKDPM RKMMDTNDAI GDASQPSAVY TWKHAFWGVD HQWDRNVFAT VGAQVDIWDH NRSEPINTFE
201: WGKDTVLSVR FNPGEPDVLL TSSSDRSLTL FDLRMSSPAR KLIMKTRCNS VCWNPREPMN FTAANEDTNC YSFDARKLNE AKVVHKGHVS AVMDVDYNPT
301: GREFVTGSYD RTVRIFNYNG DHSREIYHTK RMQRVFCVKY TYDGTYLVSG SDDTNLRLWK SKASEQLGVI LPRERKKQEY LDAVKARYNH LPEIRRIDKH
401: KHLPKPIYKA GKIRRAMIEA ESRKEERRRA HSAPGSRTMQ PFRKRRLITE VE

Best Arabidopsis Sequence Match ( AT4G28450.1 )
(BLAST)

001: MKIKTLSRSV DEYTRERSQD LQRVFHNFDP SLRPMEKAVE YQRALTAAKL EKIFARPFVG AMDGHRDGVS CMAKNPNYLK GIFSASMDGD IRLWDISSRR
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE

Arabidopsis Description

AT4g28450/F20O9_130 [Source:UniProtKB/TrEMBL;Acc:Q93VK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.