Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G28450.1 | KRH25071 | AT4G05420.1 | 18223036 |
| AT4G28450.1 | KRH43086 | AT4G05420.1 | 18223036 |
| AT4G28450.1 | KRH59212 | AT4G05420.1 | 18223036 |
| AT4G28450.1 | KRH59213 | AT4G05420.1 | 18223036 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH73094 | Soybean | nucleus | 96.85 | 95.13 |
| VIT_12s0028g03140.t01 | Wine grape | nucleus | 81.31 | 79.87 |
| PGSC0003DMT400024304 | Potato | nucleus | 77.93 | 76.55 |
| Solyc07g053660.2.1 | Tomato | nucleus | 77.7 | 76.33 |
| AT4G28450.1 | Thale cress | nucleus | 75.9 | 74.56 |
| GSMUA_Achr8P16000_001 | Banana | nucleus | 75.68 | 74.34 |
| CDX92872 | Canola | nucleus | 73.42 | 71.96 |
| Bra024202.1-P | Field mustard | nucleus | 73.2 | 71.9 |
| CDY29906 | Canola | nucleus | 73.2 | 71.74 |
| EES02165 | Sorghum | nucleus | 72.75 | 71.46 |
| EER93077 | Sorghum | nucleus | 72.52 | 71.24 |
| TraesCS3D01G168100.1 | Wheat | nucleus | 72.52 | 71.24 |
| VIT_03s0017g01870.t01 | Wine grape | cytosol | 8.33 | 71.15 |
| Zm00001d034883_P003 | Maize | nucleus, plasma membrane | 72.3 | 71.02 |
| TraesCS3A01G160900.1 | Wheat | nucleus | 71.85 | 70.58 |
| TraesCS3B01G191500.1 | Wheat | nucleus | 71.4 | 70.13 |
| Os01t0238900-01 | Rice | cytosol, nucleus | 42.34 | 67.87 |
Protein Annotations
| MapMan:17.1.3.2.1.8 | Gene3D:2.130.10.10 | UniProt:A0A0R0GAJ3 | EMBL:ACUP02008557 | InterPro:G-protein_beta_WD-40_rep | EnsemblPlantsGene:GLYMA_14G065100 |
| GO:GO:0000462 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0032040 | GO:GO:0080008 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| EnsemblPlants:KRH15046 | ProteinID:KRH15046 | ProteinID:KRH15046.1 | PFAM:PF00400 | PFAM:PF04158 | PFAM:PF08662 |
| PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22851 | SMART:SM00320 |
| SUPFAM:SSF50978 | InterPro:Sof1 | InterPro:TIF_beta_prop-like | UniParc:UPI0006ED574D | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr14:-:5350477..5356732
Molecular Weight (calculated)
50809.6 Da
IEP (calculated)
9.804
GRAVY (calculated)
-0.575
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVKVISRSV DEFTRERSQD LQRVFRNYDP SLRPQEKAVE YVRAVNAVKL DKIFARPFIG ALDGHIDAVS CMTRNPSQLK GIFSSSMDGD IRLWDLAARR
101: IVCQFPGHRG AVRGLTASTD GHILYQTLEC SFTTLMESDD STKSTVEPAS VYVWKNAFWG ADHQWDGEHF ATAGAQVDIW NHNRSQPINS FEWGTDTVIS
201: VRFNPGEPNL LATSASDRSI ILYDLRMSSP VRKMIMMTKT NSICWNPMEP INFTAANEDG NCYSYDARKL DEAKCVHKDH VSAVMDVDYS PTGREFVTGS
301: YDRTVRIFQY NGGHSKEIYH TKRMQRVFCV KFSGDGSYVI SGSDDTNLRL WKAKASEQLG VILPRERKKH EYHEAIKKRY KHLPEVNRIA RHRHLPRPIF
401: KASALMCVMA DAKRRKEEKR KAHSAPGSIT TQPLRRRRII KEVE
101: IVCQFPGHRG AVRGLTASTD GHILYQTLEC SFTTLMESDD STKSTVEPAS VYVWKNAFWG ADHQWDGEHF ATAGAQVDIW NHNRSQPINS FEWGTDTVIS
201: VRFNPGEPNL LATSASDRSI ILYDLRMSSP VRKMIMMTKT NSICWNPMEP INFTAANEDG NCYSYDARKL DEAKCVHKDH VSAVMDVDYS PTGREFVTGS
301: YDRTVRIFQY NGGHSKEIYH TKRMQRVFCV KFSGDGSYVI SGSDDTNLRL WKAKASEQLG VILPRERKKH EYHEAIKKRY KHLPEVNRIA RHRHLPRPIF
401: KASALMCVMA DAKRRKEEKR KAHSAPGSIT TQPLRRRRII KEVE
001: MKIKTLSRSV DEYTRERSQD LQRVFHNFDP SLRPMEKAVE YQRALTAAKL EKIFARPFVG AMDGHRDGVS CMAKNPNYLK GIFSASMDGD IRLWDISSRR
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE
Arabidopsis Description
AT4g28450/F20O9_130 [Source:UniProtKB/TrEMBL;Acc:Q93VK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.