CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG22678

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28450.1	KXG22678	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93077	Sorghum	nucleus	96.9	96.9
Os01t0238900-01	Rice	cytosol, nucleus	54.65	89.17
TraesCS3A01G160900.1	Wheat	nucleus	87.17	87.17
TraesCS3B01G191500.1	Wheat	nucleus	86.95	86.95
TraesCS3D01G168100.1	Wheat	nucleus	86.95	86.95
GSMUA_Achr8P16000_001	Banana	nucleus	82.3	82.3
VIT_12s0028g03140.t01	Wine grape	nucleus	77.65	77.65
KRH73094	Soybean	nucleus	73.67	73.67
KRH15046	Soybean	nucleus	71.46	72.75
PGSC0003DMT400024304	Potato	nucleus	72.57	72.57
Solyc07g053660.2.1	Tomato	nucleus	72.57	72.57
AT4G28450.1	Thale cress	nucleus	71.46	71.46
CDX92872	Canola	nucleus	69.91	69.76
Bra024202.1-P	Field mustard	nucleus	69.47	69.47
CDY29906	Canola	nucleus	69.47	69.32
VIT_03s0017g01870.t01	Wine grape	cytosol	7.3	63.46

Protein Annotations

MapMan:17.1.3.2.1.8	Gene3D:2.130.10.10	EntrezGene:8077546	UniProt:C5XJI5	ncoils:Coil	EnsemblPlants:EES02165
ProteinID:EES02165	ProteinID:EES02165.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000462	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0032040	GO:GO:0080008
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF04158	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22851	SMART:SM00320	EnsemblPlantsGene:SORBI_3003G002700
SUPFAM:SSF50978	unigene:Sbi.21247	InterPro:Sof1	UniParc:UPI0001A84D23	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002457045.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:310639..317871

Molecular Weight (calculated)

52047.1 Da

IEP (calculated)

9.766

GRAVY (calculated)

-0.659

Length

452 amino acids

Sequence
(BLAST)

001: MRVKVISRST DEFTRERSQD LQKVFRNYDP ALRSQEKAVE YTRALNAAKL EKIFAKPFIG AMNGHIDAVS CMAKNPNHLK AIFSGSMDGD IRLWDIAARK
101: TVCQFPGHQG AVRGLTTSTE GDLLVSCGVD CTVRLWKVPM LKMVDTSDHN GDNSQPSAVY TWKHAFWGAD HQWDGNLFAT VGAQVDIWDP DRSEPINSFE
201: WGKDTVLSVR FDPGDCNILI TSGSDRSLTL YDLRMSSPAR KLIMKTRCNS VCWNPREPMN FTAANEDTNC YSFDARRLDE AKIVHKGHVS AVMDIDYSPT
301: GREFVTGSYD RTVRIFNYLG DHSREIYHTK RMQRVFCVKY TYDGTYLVSG SDDTNLRLWK SKASEQLGVL LPRERKKQEY QDALKERYKH LPEVKRIVRH
401: RHLPKPIYKA ANLRRTMIEA ENRKEERRRK HSAPGSMPVQ PFRKRRIIKE VE

Best Arabidopsis Sequence Match ( AT4G28450.1 )
(BLAST)

001: MKIKTLSRSV DEYTRERSQD LQRVFHNFDP SLRPMEKAVE YQRALTAAKL EKIFARPFVG AMDGHRDGVS CMAKNPNYLK GIFSASMDGD IRLWDISSRR
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE

Arabidopsis Description

AT4g28450/F20O9_130 [Source:UniProtKB/TrEMBL;Acc:Q93VK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.