Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G28450.1 | CDY68484 | AT4G05420.1 | 18223036 |
| AT4G28450.1 | CDY69266 | AT4G05420.1 | 18223036 |
| AT4G28450.1 | CDY69930 | AT4G05420.1 | 18223036 |
| AT4G28450.1 | CDY70585 | AT4G05420.1 | 18223036 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024202.1-P | Field mustard | nucleus | 99.78 | 100.0 |
| CDX92872 | Canola | nucleus | 99.56 | 99.56 |
| AT4G28450.1 | Thale cress | nucleus | 87.42 | 87.61 |
| VIT_12s0028g03140.t01 | Wine grape | nucleus | 77.7 | 77.88 |
| PGSC0003DMT400024304 | Potato | nucleus | 75.5 | 75.66 |
| Solyc07g053660.2.1 | Tomato | nucleus | 75.5 | 75.66 |
| KRH73094 | Soybean | nucleus | 74.61 | 74.78 |
| KRH15046 | Soybean | nucleus | 71.74 | 73.2 |
| GSMUA_Achr8P16000_001 | Banana | nucleus | 72.63 | 72.79 |
| TraesCS3D01G168100.1 | Wheat | nucleus | 69.76 | 69.91 |
| EES02165 | Sorghum | nucleus | 69.32 | 69.47 |
| Zm00001d034883_P003 | Maize | nucleus, plasma membrane | 69.09 | 69.25 |
| TraesCS3A01G160900.1 | Wheat | nucleus | 68.87 | 69.03 |
| EER93077 | Sorghum | nucleus | 68.87 | 69.03 |
| TraesCS3B01G191500.1 | Wheat | nucleus | 68.65 | 68.81 |
| Os01t0238900-01 | Rice | cytosol, nucleus | 41.28 | 67.51 |
| VIT_03s0017g01870.t01 | Wine grape | cytosol | 6.4 | 55.77 |
Protein Annotations
| MapMan:17.1.3.2.1.8 | Gene3D:2.130.10.10 | UniProt:A0A078GWJ4 | EnsemblPlants:CDY29906 | ProteinID:CDY29906 | ProteinID:CDY29906.1 |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00044366001 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF04158 | PRINTS:PR00320 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22851 | SMART:SM00320 | SUPFAM:SSF50978 | InterPro:Sof1 |
| UniPathway:UPA00143 | UniParc:UPI0004EECC2A | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
BnaA03g49270DBnaA03g49270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWJ4]
Coordinates
chrLK032245:-:474231..477184
Molecular Weight (calculated)
51330.8 Da
IEP (calculated)
9.753
GRAVY (calculated)
-0.639
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MRIKTISRSV DEFTRERSQD LQRVFHNFDP SLRPMEKAVE YQRALTAAKL EKIFARPFVG AMDGHRDGIS CMAKNPNYLK GIFSASMDGD IRLWDIATSR
101: RTVCQFPGHL GAVRGLTVST DGNVLVSCGT DCNVRLWSVP RPSLEDSDLS SEKSTEPSAV YTCKNALLAV DHQFEGDLFA TAGAQLDIWN HNRSQPVQSF
201: TSGSHSVISV RFNPGEPDIL ATSSGDNHIS IYDIRMSSAA RKILMRTKTN SIAWNPMEPM NFTAANEDGN CYSFDGRKNE EAKCVHKDHV SAVMDIDFSP
301: TGREFVTGSY DRSVRIFPYN GGHSREIYHT KRMQRVFCVK YSSDATYVIS GSDDTNLRLW KAKASEQLGV ILPREQKKHE YNEAVKNRYK HLPEIKRIVR
401: HRHLPKPIYK AKAESRAMND AKRRKDDRRK AHSAPGTVVT ESHRTRRIIK EVE
101: RTVCQFPGHL GAVRGLTVST DGNVLVSCGT DCNVRLWSVP RPSLEDSDLS SEKSTEPSAV YTCKNALLAV DHQFEGDLFA TAGAQLDIWN HNRSQPVQSF
201: TSGSHSVISV RFNPGEPDIL ATSSGDNHIS IYDIRMSSAA RKILMRTKTN SIAWNPMEPM NFTAANEDGN CYSFDGRKNE EAKCVHKDHV SAVMDIDFSP
301: TGREFVTGSY DRSVRIFPYN GGHSREIYHT KRMQRVFCVK YSSDATYVIS GSDDTNLRLW KAKASEQLGV ILPREQKKHE YNEAVKNRYK HLPEIKRIVR
401: HRHLPKPIYK AKAESRAMND AKRRKDDRRK AHSAPGTVVT ESHRTRRIIK EVE
001: MKIKTLSRSV DEYTRERSQD LQRVFHNFDP SLRPMEKAVE YQRALTAAKL EKIFARPFVG AMDGHRDGVS CMAKNPNYLK GIFSASMDGD IRLWDISSRR
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE
Arabidopsis Description
AT4g28450/F20O9_130 [Source:UniProtKB/TrEMBL;Acc:Q93VK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.