CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 23041469
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH25071
KRH43086
KRH59212
KRH59213

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28450.1	KRH25071	AT4G05420.1	18223036
AT4G28450.1	KRH43086	AT4G05420.1	18223036
AT4G28450.1	KRH59212	AT4G05420.1	18223036
AT4G28450.1	KRH59213	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15046	Soybean	nucleus	95.13	96.85
VIT_12s0028g03140.t01	Wine grape	nucleus	82.52	82.52
PGSC0003DMT400024304	Potato	nucleus	79.42	79.42
Solyc07g053660.2.1	Tomato	nucleus	79.2	79.2
AT4G28450.1	Thale cress	nucleus	76.99	76.99
GSMUA_Achr8P16000_001	Banana	nucleus	76.55	76.55
CDX92872	Canola	nucleus	75.0	74.83
Bra024202.1-P	Field mustard	nucleus	74.78	74.78
CDY29906	Canola	nucleus	74.78	74.61
EES02165	Sorghum	nucleus	73.67	73.67
Zm00001d034883_P003	Maize	nucleus, plasma membrane	73.23	73.23
TraesCS3D01G168100.1	Wheat	nucleus	73.23	73.23
EER93077	Sorghum	nucleus	73.23	73.23
TraesCS3A01G160900.1	Wheat	nucleus	72.35	72.35
Os01t0238900-01	Rice	cytosol, nucleus	44.25	72.2
TraesCS3B01G191500.1	Wheat	nucleus	71.9	71.9
VIT_03s0017g01870.t01	Wine grape	cytosol	8.19	71.15

Protein Annotations

EntrezGene:100812671	MapMan:17.1.3.2.1.8	Gene3D:2.130.10.10	EMBL:ACUP02001265	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
EnsemblPlantsGene:GLYMA_02G251700	GO:GO:0000462	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0032040	GO:GO:0080008	UniProt:I1JI32	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH73094	ProteinID:KRH73094	ProteinID:KRH73094.1	PFAM:PF00400
PFAM:PF04158	PFAM:PF08662	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22851	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sof1	InterPro:TIF_beta_prop-like	UniParc:UPI0002336C04
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:43887081..43893301

Molecular Weight (calculated)

51597.5 Da

IEP (calculated)

10.093

GRAVY (calculated)

-0.570

Length

452 amino acids

Sequence
(BLAST)

001: MKVKVISRSV DEFTRERSQD LQRVFRNYDP SLRPQEKAVE YVRAVNAVKL DKIFARPFIG ALDGHVDAVS CMTRNPSQLK GIFSSSMDGD IRLWDLAARR
101: TVCQFPGHRG AVRGLTASTD GRILVSCGTD CTIRLWSVPI TTLMESDDST KSTVEPASVY VWKNAFWGAD HQWDGEHFAT AGAQVDIWNH NRSQPINSFE
201: WGSDTVISVR FNPGEPNLLA TSASDRSIIL YDLRMSSPVR KMIMMTKTNS ICWNPMEPIN FTAANEDGNC YSYDARKLDE AKCVHRDHVS AVMDVDYSPT
301: GREFVTGSYD RTVRIFQYNG GHSKEIYHTK RMQRVFAVKF SGDGSYVISG SDDTNLRLWK AKASEQLGVI LPRERKKHEY HEAIKKRYKH LPEVNRIARH
401: RHLPRPIFKA SALMRVMADA KRRKEEKRKA HSAPGSITTQ PLRRRRIIKE VE

Best Arabidopsis Sequence Match ( AT4G28450.1 )
(BLAST)

001: MKIKTLSRSV DEYTRERSQD LQRVFHNFDP SLRPMEKAVE YQRALTAAKL EKIFARPFVG AMDGHRDGVS CMAKNPNYLK GIFSASMDGD IRLWDISSRR
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE

Arabidopsis Description

AT4g28450/F20O9_130 [Source:UniProtKB/TrEMBL;Acc:Q93VK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.