Factsheet for PGSC0003DMT400024304

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009595

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28450.1	PGSC0003DMT400009595	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053660.2.1	Tomato	nucleus	98.23	98.23
VIT_12s0028g03140.t01	Wine grape	nucleus	82.74	82.74
KRH73094	Soybean	nucleus	79.42	79.42
AT4G28450.1	Thale cress	nucleus	78.1	78.1
KRH15046	Soybean	nucleus	76.55	77.93
VIT_03s0017g01870.t01	Wine grape	cytosol	8.85	76.92
CDX92872	Canola	nucleus	76.11	75.94
GSMUA_Achr8P16000_001	Banana	nucleus	75.89	75.89
Bra024202.1-P	Field mustard	nucleus	75.66	75.66
CDY29906	Canola	nucleus	75.66	75.5
Os01t0238900-01	Rice	cytosol, nucleus	45.58	74.37
Zm00001d034883_P003	Maize	nucleus, plasma membrane	73.23	73.23
EER93077	Sorghum	nucleus	73.01	73.01
TraesCS3D01G168100.1	Wheat	nucleus	72.79	72.79
EES02165	Sorghum	nucleus	72.57	72.57
TraesCS3A01G160900.1	Wheat	nucleus	72.35	72.35
TraesCS3B01G191500.1	Wheat	nucleus	71.68	71.68

Protein Annotations

EntrezGene:102585720	MapMan:17.1.3.2.1.8	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0080008	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:M1AJV3	PFAM:PF00400	PFAM:PF04158	PFAM:PF08662
EnsemblPlantsGene:PGSC0003DMG401009395	PGSC:PGSC0003DMG401009395	EnsemblPlants:PGSC0003DMT400024304	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22851	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sof1	InterPro:TIF_beta_prop-like
UniParc:UPI000295A679	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_006348822.1	RefSeq:XP_006348823.1	RefSeq:XP_006348824.1	RefSeq:XP_015164852.1	SEG:seg	:

Description

U3 small nucleolar RNA (U3 snorna) associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG401009395]

Coordinates

chr7:-:49655546..49662892

Molecular Weight (calculated)

51824.6 Da

IEP (calculated)

10.234

GRAVY (calculated)

-0.643

Length

452 amino acids

Sequence
(BLAST)

001: MRLKVISRST DDFTRERSQD LQRVFRNFDP SLRHQEKAVE YVRALNAVKL DKIFARPFVG AMDGHIDAVS CMAKNPNHLK GIFSGSMDGD VRLWDLATRR
101: TVRQFPGHQG AVRGLTVSTD GRILVSCGTD CTVRLWKVPV ATLIESDDVS DNSSQPLAVH VWKNAFWGVD HQWDGDLFAT AGAQVDIWNH NRSQPVNSFE
201: WGKDTVTSVR FNPGEPNLLA TSASDRSISI YDLRLSTPAR KVIMATKTNS IAWNPMEPMN FTAANDDGRC YSYDVRKLNE AKCVHIDHTS SVMDIDYSPT
301: GREFVTGSYD RSVRIFKYNG GHSREIYHAK RMQRVFCVKF SCDASYIISG SDDTNLRLWK AKASEQMGVV LPRERKRHEY LEAVKNRYKH LPEVRRIDRH
401: RHLPKPIYKA SRQIREMTES ARRKEERRKA HSAPGSIKNK QLRTKRIVRE VE

Best Arabidopsis Sequence Match ( AT4G28450.1 )
(BLAST)

001: MKIKTLSRSV DEYTRERSQD LQRVFHNFDP SLRPMEKAVE YQRALTAAKL EKIFARPFVG AMDGHRDGVS CMAKNPNYLK GIFSASMDGD IRLWDISSRR
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE

Arabidopsis Description

AT4g28450/F20O9_130 [Source:UniProtKB/TrEMBL;Acc:Q93VK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.