Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92872 | Canola | nucleus | 87.83 | 87.64 |
| Bra024202.1-P | Field mustard | nucleus | 87.61 | 87.61 |
| CDY29906 | Canola | nucleus | 87.61 | 87.42 |
| VIT_12s0028g03140.t01 | Wine grape | nucleus | 80.09 | 80.09 |
| Solyc07g053660.2.1 | Tomato | nucleus | 78.32 | 78.32 |
| PGSC0003DMT400024304 | Potato | nucleus | 78.1 | 78.1 |
| KRH73094 | Soybean | nucleus | 76.99 | 76.99 |
| KRH15046 | Soybean | nucleus | 74.56 | 75.9 |
| GSMUA_Achr8P16000_001 | Banana | nucleus | 75.0 | 75.0 |
| Zm00001d034883_P003 | Maize | nucleus, plasma membrane | 71.68 | 71.68 |
| EES02165 | Sorghum | nucleus | 71.46 | 71.46 |
| EER93077 | Sorghum | nucleus | 71.46 | 71.46 |
| TraesCS3D01G168100.1 | Wheat | nucleus | 70.35 | 70.35 |
| Os01t0238900-01 | Rice | cytosol, nucleus | 42.7 | 69.68 |
| TraesCS3A01G160900.1 | Wheat | nucleus | 69.47 | 69.47 |
| TraesCS3B01G191500.1 | Wheat | nucleus | 69.25 | 69.25 |
| VIT_03s0017g01870.t01 | Wine grape | cytosol | 7.3 | 63.46 |
Protein Annotations
| MapMan:17.1.3.2.1.8 | Gene3D:2.130.10.10 | EntrezGene:828962 | UniProt:A0A178UZJ7 | ProteinID:AEE85488.1 | EMBL:AF372943 |
| ArrayExpress:AT4G28450 | EnsemblPlantsGene:AT4G28450 | RefSeq:AT4G28450 | TAIR:AT4G28450 | RefSeq:AT4G28450-TAIR-G | EnsemblPlants:AT4G28450.1 |
| TAIR:AT4G28450.1 | EMBL:AY045624 | EMBL:AY143901 | Unigene:At.2008 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0000462 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0032040 | GO:GO:0080008 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | RefSeq:NP_567810.5 |
| ProteinID:OAO98880.1 | PFAM:PF00400 | PFAM:PF04158 | PFAM:PF08662 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR22851 | UniProt:Q93VK1 | SMART:SM00320 | SUPFAM:SSF50978 | InterPro:Sof1 |
| InterPro:TIF_beta_prop-like | UniParc:UPI00000AC456 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | : | : | : | : | : |
Description
AT4g28450/F20O9_130 [Source:UniProtKB/TrEMBL;Acc:Q93VK1]
Coordinates
chr4:-:14061403..14064708
Molecular Weight (calculated)
51361.1 Da
IEP (calculated)
9.931
GRAVY (calculated)
-0.554
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIKTLSRSV DEYTRERSQD LQRVFHNFDP SLRPMEKAVE YQRALTAAKL EKIFARPFVG AMDGHRDGVS CMAKNPNYLK GIFSASMDGD IRLWDISSRR
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.