CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY68484
CDY69266
CDY69930
CDY70585

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28450.1	CDY68484	AT4G05420.1	18223036
AT4G28450.1	CDY69266	AT4G05420.1	18223036
AT4G28450.1	CDY69930	AT4G05420.1	18223036
AT4G28450.1	CDY70585	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29906	Canola	nucleus	99.56	99.56
AT4G28450.1	Thale cress	nucleus	87.64	87.83
VIT_12s0028g03140.t01	Wine grape	nucleus	78.15	78.32
PGSC0003DMT400024304	Potato	nucleus	75.94	76.11
Solyc07g053660.2.1	Tomato	nucleus	75.94	76.11
KRH73094	Soybean	nucleus	74.83	75.0
KRH15046	Soybean	nucleus	71.96	73.42
GSMUA_Achr8P16000_001	Banana	nucleus	72.85	73.01
TraesCS3D01G168100.1	Wheat	nucleus	70.2	70.35
EES02165	Sorghum	nucleus	69.76	69.91
Zm00001d034883_P003	Maize	nucleus, plasma membrane	69.54	69.69
EER93077	Sorghum	nucleus	69.32	69.47
TraesCS3A01G160900.1	Wheat	nucleus	69.32	69.47
TraesCS3B01G191500.1	Wheat	nucleus	69.09	69.25
Os01t0238900-01	Rice	cytosol, nucleus	41.5	67.87
VIT_03s0017g01870.t01	Wine grape	cytosol	6.4	55.77

Protein Annotations

MapMan:17.1.3.2.1.8	Gene3D:2.130.10.10	EnsemblPlants:CDX92872	ProteinID:CDX92872	ProteinID:CDX92872.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00154711001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFAM:PF04158	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22851	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sof1	UniPathway:UPA00143
UniParc:UPI0004EE4D06	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

BnaC07g41300D

Coordinates

chrLK031873:-:1274721..1277769

Molecular Weight (calculated)

51359.8 Da

IEP (calculated)

9.753

GRAVY (calculated)

-0.655

Length

453 amino acids

Sequence
(BLAST)

001: MRIKTISRSV DEFTRERSQD LQRVFHNFDP SLRPMEKAVE YQRALTAAKL EKIFARPFVG AMDGHRDGIS CMAKNPNYLK GIFSASMDGD IRLWDIATSR
101: RTVCQFPGHQ GAVRGLTVST DGNVLVSCGT DCNVRLWSVP RPSLEDSDLS SEKSTEPSAV YTCKNALLAV DHQFEGDLFA TAGAQLDIWN HNRSQPVQSF
201: TSGSHSVISV RFNPGEPDIL ATSSGDNHIS IYDIRMSSAA RKILMRTKTN SIAWNPMEPM NFTAANEDGN CYSFDGRKNE EAKCVHKDHV SAVMDIDFSP
301: TGREFVTGSY DRSVRIFPYN GGHSREIYHT KRMQRVFCVK YSSDATYVIS GSDDTNLRLW KAKASEQLGV ILPREQKKHE YNEAVKNRYK HLPEIKRIVR
401: HRHLPKPIYK AKAESRAMND AKRRKDERRK AHSAPGTVVT ESHRTRRIIK EVE

Best Arabidopsis Sequence Match ( AT4G28450.1 )
(BLAST)

001: MKIKTLSRSV DEYTRERSQD LQRVFHNFDP SLRPMEKAVE YQRALTAAKL EKIFARPFVG AMDGHRDGVS CMAKNPNYLK GIFSASMDGD IRLWDISSRR
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE

Arabidopsis Description

AT4g28450/F20O9_130 [Source:UniProtKB/TrEMBL;Acc:Q93VK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.