Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G160900.1 | Wheat | nucleus | 97.79 | 97.79 |
| TraesCS3D01G168100.1 | Wheat | nucleus | 96.68 | 96.68 |
| Os01t0238900-01 | Rice | cytosol, nucleus | 54.87 | 89.53 |
| Zm00001d034883_P003 | Maize | nucleus, plasma membrane | 87.39 | 87.39 |
| EES02165 | Sorghum | nucleus | 86.95 | 86.95 |
| EER93077 | Sorghum | nucleus | 86.5 | 86.5 |
| GSMUA_Achr8P16000_001 | Banana | nucleus | 79.42 | 79.42 |
| VIT_12s0028g03140.t01 | Wine grape | nucleus | 75.22 | 75.22 |
| Solyc07g053660.2.1 | Tomato | nucleus | 72.12 | 72.12 |
| KRH73094 | Soybean | nucleus | 71.9 | 71.9 |
| PGSC0003DMT400024304 | Potato | nucleus | 71.68 | 71.68 |
| KRH15046 | Soybean | nucleus | 70.13 | 71.4 |
| AT4G28450.1 | Thale cress | nucleus | 69.25 | 69.25 |
| CDX92872 | Canola | nucleus | 69.25 | 69.09 |
| Bra024202.1-P | Field mustard | nucleus | 68.81 | 68.81 |
| CDY29906 | Canola | nucleus | 68.81 | 68.65 |
| VIT_03s0017g01870.t01 | Wine grape | cytosol | 6.86 | 59.62 |
Protein Annotations
| MapMan:17.1.3.2.1.8 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0080008 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF04158 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR22851 | SMART:SM00320 | SUPFAM:SSF50978 | InterPro:Sof1 | EnsemblPlantsGene:TraesCS3B01G191500 |
| EnsemblPlants:TraesCS3B01G191500.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| TIGR:cd00200 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:204286843..204295498
Molecular Weight (calculated)
52031.0 Da
IEP (calculated)
9.842
GRAVY (calculated)
-0.644
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVKVISRST DDFTRERSQD LQKVFRNYDP ALRSQEKAVE YTRALNAAKL EKIFARPFIG AMDGHIDAVS CMAKNMNYVK AMFSGSMDGD IRLWDIAARK
101: TVCQFPGHQG AVRGLATSTD GDLLISCGVD CTVRLWKDPM RKMMNTDDAI GDASQPSAVY TWKHAFWGVD HQWDRNVFAT VGAQVDIWDH NRSEPINTFE
201: WGKDTVLSVR FNPGEPDVLL TSSSDRSLTL FDLRMSSPAR KLIMKTRCNS VCWNPREPMN FTAANEDTNC YSFDSRKLNE AKVVHKGHVS AVMDVDYNPT
301: GREFVTGSYD RTVRIFNYNG DHSREIYHTK RMQRVFCVKY TYDGTYLVSG SDDTNLRLWK SKASEQLGVI LPRERKKQEY QDAVVERYGH LAEIRRIVKH
401: KHLPKPIYKA GKIRRAMIEA ESRKEERRRA HSAPGSRTMQ PFRKRRLITE VE
101: TVCQFPGHQG AVRGLATSTD GDLLISCGVD CTVRLWKDPM RKMMNTDDAI GDASQPSAVY TWKHAFWGVD HQWDRNVFAT VGAQVDIWDH NRSEPINTFE
201: WGKDTVLSVR FNPGEPDVLL TSSSDRSLTL FDLRMSSPAR KLIMKTRCNS VCWNPREPMN FTAANEDTNC YSFDSRKLNE AKVVHKGHVS AVMDVDYNPT
301: GREFVTGSYD RTVRIFNYNG DHSREIYHTK RMQRVFCVKY TYDGTYLVSG SDDTNLRLWK SKASEQLGVI LPRERKKQEY QDAVVERYGH LAEIRRIVKH
401: KHLPKPIYKA GKIRRAMIEA ESRKEERRRA HSAPGSRTMQ PFRKRRLITE VE
001: MKIKTLSRSV DEYTRERSQD LQRVFHNFDP SLRPMEKAVE YQRALTAAKL EKIFARPFVG AMDGHRDGVS CMAKNPNYLK GIFSASMDGD IRLWDISSRR
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE
101: TVCQFPGHQG AVRGLTASTD GNVLVSCGTD CTVRLWNVPR PSLEDSSISS ENFIEPSATY VWKNAFWAVD HQFEGDLFAT AGAQLDIWNH NRSQPVQSFQ
201: WGTDSVISVR FNPGEPNLLA TSASDRSITI YDLRLSSAAR KIIMMTKTNS IAWNPMEPMN LTAANEDGSC YSFDGRKLDE AKCVHKDHVS AVMDIDFSPT
301: GREFVTGSYD RSVRIFPYNG GHSREIYHTK RMQRVFCVKY SCDATYVISG SDDTNLRLWK AKASEQLGVI LPREQKKHEY NEAVKNRYKH LSEVKRIVRH
401: RHLPKPIYKA MGIIRTVNDS KRRKEARRKA HSAPGTVVTA PLRKRKIIKE VE
Arabidopsis Description
AT4g28450/F20O9_130 [Source:UniProtKB/TrEMBL;Acc:Q93VK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.