Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G210100.2 | Wheat | nucleus | 95.65 | 90.98 |
| HORVU7Hr1G056620.1 | Barley | cytosol | 10.06 | 88.89 |
| HORVU3Hr1G050820.11 | Barley | plastid | 89.75 | 81.98 |
| HORVU7Hr1G056610.1 | Barley | cytosol | 13.64 | 70.85 |
| TraesCS1B01G473400.1 | Wheat | nucleus | 70.31 | 66.7 |
| KRH25071 | Soybean | nucleus | 37.81 | 65.49 |
| GSMUA_Achr8P07200_001 | Banana | cytosol, nucleus, plasma membrane | 68.09 | 64.65 |
| CDY68484 | Canola | cytosol, endoplasmic reticulum, vacuole | 33.37 | 64.49 |
| CDY69266 | Canola | nucleus | 34.14 | 64.42 |
| KRH59212 | Soybean | cytosol, nucleus | 32.79 | 63.6 |
| Solyc02g021650.2.1 | Tomato | nucleus | 66.44 | 62.74 |
| VIT_10s0003g04360.t01 | Wine grape | cytosol, nucleus, plasma membrane | 66.05 | 62.72 |
| Bra029577.1-P | Field mustard | nucleus, peroxisome, plastid | 65.47 | 62.34 |
| AT4G05420.1 | Thale cress | cytosol, nucleus, peroxisome | 65.47 | 62.22 |
| AT4G21100.1 | Thale cress | nucleus | 64.51 | 61.31 |
| KRH43086 | Soybean | nucleus | 11.9 | 60.59 |
| CDY57060 | Canola | cytosol, nucleus, plasma membrane | 64.12 | 60.11 |
| KRH59213 | Soybean | cytosol, plasma membrane, plastid | 28.72 | 59.4 |
| CDX76416 | Canola | cytosol | 63.73 | 58.42 |
| CDY70585 | Canola | plastid | 19.73 | 57.46 |
| CDY69930 | Canola | plastid | 25.34 | 55.86 |
| Bra020884.1-P | Field mustard | cytosol | 63.73 | 51.4 |
| PGSC0003DMT400009595 | Potato | nucleus | 10.73 | 42.53 |
| CDY50606 | Canola | golgi, mitochondrion, plasma membrane | 11.99 | 39.24 |
| CDY54326 | Canola | cytosol | 7.74 | 34.93 |
| TraesCS6B01G135400.1 | Wheat | unclear | 22.05 | 18.58 |
| TraesCS2B01G258400.1 | Wheat | cytosol, nucleus | 17.6 | 15.05 |
Protein Annotations
| MapMan:14.6.1.3.1 | MapMan:19.2.2.8.3.2 | Gene3D:2.130.10.10 | MapMan:26.1.1.3.2 | Gene3D:3.30.980.30 | InterPro:Cleavage/polyA-sp_fac_asu_C |
| InterPro:DDB1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR015943 | PFAM:PF03178 |
| PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF3 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS3B01G240600 | EnsemblPlants:TraesCS3B01G240600.1 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3B:+:379347008..379358817
Molecular Weight (calculated)
115304.0 Da
IEP (calculated)
6.398
GRAVY (calculated)
0.029
Length
1034 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRAWNYVVTA HKPTAVSHSC VGNFTAPHQL NLIVAKCNHI EIYMLTPHGL QLMLDVPLYG TVATLELYRS RSETQDFLFI GMERYRYCVL QWDGRKSELL
0101: TRSEGDASEF LGRPTDNGQV IQALNIRLEE LVVLDIKFLY RCENPTVVVL YQDNKDARHV KTYEIELEDK NARLLIPVPL GGVIIVGEDT IVYCSSETTK
0201: SLSIKQSIIR AVGRVDQCGS RYLYGDNTGA LHLLTITHES GRVTGLKSHF IGETSIASTI SYVGSGFFYV GSQFGDSQLL KLNTQADARG SFVEILEQYI
0301: NTGPIVDLCV VDFGRRGQGQ VITCSGAHKD GSIRIIRNEI VITDQASLQL HGMKGLWSLK CSSNDPYDIF LVVTFINETR FLAINKENKL VETPIEGFNS
0401: ETQTLVCESA IHNQLIQVTA QSVRLVSSTS RDLLDQWFAP TGFPVNVAAA NACQVLLATG GFHLIYLEIT NSKLVEVKHV ELEHAISCLD INPIGENLQY
0501: SSLAAVGMWT DTSVRIFSLP GIELIRKENL GEVVHRSVLL CTIEEVSYLF CALGDGHLFS FVLNISTCEL SDRSRVSLGT QPISLCKFLS HDKAHVLAAS
0601: DRPTIICSSD KKLLYSYVNL KEMNHVCPFN TVIFPESIAI AKEAELSIGA INYSRKRHIH TIPLNEHARR ICHQEQSQTL ALCSFKNKYM HGVSETHFVR
0701: LLDHQTFGIL STHSLDAFEC GCSIISCSFS DDDNFYYCVG TAYVLPMEDE PTKGRILVFL VKEGKLQLIK AKETKGAVYS LKSFNGKLLA AINQKIRLYK
0801: WVQRNDMSHV LQFECAHDGH VLSLYTQTRG DFILVGDLMR SLSLLIYKHE EGTIEEVARD LNTNWITAVE MLDDDIYIGA DNCCNLFTVC KSPYGFLEPV
0901: GEYHLGDVVN RLHHGSLVMH HADSGTGQFP SVIFGTVNGA IGVIASLPYD LYAFLEKLQS VLVNFVKGVG NLSHAEWRSF CNARRTSSAR NFVDGDLIES
1001: FFSLSPSQMV EVACAMGVPP IELYKKVQEL INPH
0101: TRSEGDASEF LGRPTDNGQV IQALNIRLEE LVVLDIKFLY RCENPTVVVL YQDNKDARHV KTYEIELEDK NARLLIPVPL GGVIIVGEDT IVYCSSETTK
0201: SLSIKQSIIR AVGRVDQCGS RYLYGDNTGA LHLLTITHES GRVTGLKSHF IGETSIASTI SYVGSGFFYV GSQFGDSQLL KLNTQADARG SFVEILEQYI
0301: NTGPIVDLCV VDFGRRGQGQ VITCSGAHKD GSIRIIRNEI VITDQASLQL HGMKGLWSLK CSSNDPYDIF LVVTFINETR FLAINKENKL VETPIEGFNS
0401: ETQTLVCESA IHNQLIQVTA QSVRLVSSTS RDLLDQWFAP TGFPVNVAAA NACQVLLATG GFHLIYLEIT NSKLVEVKHV ELEHAISCLD INPIGENLQY
0501: SSLAAVGMWT DTSVRIFSLP GIELIRKENL GEVVHRSVLL CTIEEVSYLF CALGDGHLFS FVLNISTCEL SDRSRVSLGT QPISLCKFLS HDKAHVLAAS
0601: DRPTIICSSD KKLLYSYVNL KEMNHVCPFN TVIFPESIAI AKEAELSIGA INYSRKRHIH TIPLNEHARR ICHQEQSQTL ALCSFKNKYM HGVSETHFVR
0701: LLDHQTFGIL STHSLDAFEC GCSIISCSFS DDDNFYYCVG TAYVLPMEDE PTKGRILVFL VKEGKLQLIK AKETKGAVYS LKSFNGKLLA AINQKIRLYK
0801: WVQRNDMSHV LQFECAHDGH VLSLYTQTRG DFILVGDLMR SLSLLIYKHE EGTIEEVARD LNTNWITAVE MLDDDIYIGA DNCCNLFTVC KSPYGFLEPV
0901: GEYHLGDVVN RLHHGSLVMH HADSGTGQFP SVIFGTVNGA IGVIASLPYD LYAFLEKLQS VLVNFVKGVG NLSHAEWRSF CNARRTSSAR NFVDGDLIES
1001: FFSLSPSQMV EVACAMGVPP IELYKKVQEL INPH
0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI
0101: TRAMGDVSDR IGRPTDNGQV IPFDNKGQLK EAFNIRLEEL QVLDIKFLFG CAKPTIAVLY QDNKDARHVK TYEVSLKDKD FVEGPWSQNS LDNGADLLIP
0201: VPPPLCGVLI IGEETIVYCS ASAFKAIPIR PSITKAYGRV DVDGSRYLLG DHAGMIHLLV ITHEKEKVTG LKIELLGETS IASTISYLDN AVVFVGSSYG
0301: DSQLVKLNLH PDAKGSYVEV LERYINLGPI VDFCVVDLER QGQGQVVTCS GAFKDGSLRV VRNGIGINEQ ASVELQGIKG MWSLKSSIDE AFDTFLVVSF
0401: ISETRILAMN LEDELEETEI EGFLSQVQTL FCHDAVYNQL VQVTSNSVRL VSSTTRELRD EWHAPAGFTV NVATANASQV LLATGGGHLV YLEIGDGKLT
0501: EVQHALLEYE VSCLDINPIG DNPNYSQLAA VGMWTDISVR IFSLPELTLI TKEQLGGEII PRSVLLCAFE GISYLLCALG DGHLLNFQMD TTTGQLKDRK
0601: KVSLGTQPIT LRTFSSKSAT HVFAASDRPT VIYSSNKKLL YSNVNLKEVS HMCPFNSAAF PDSLAIAREG ELTIGTIDDI QKLHIRTIPL GEHARRICHQ
0701: EQTRTFGICS LGNQSNSEES EMHFVRLLDD QTFEFMSTYP LDSFEYGCSI LSCSFTEDKN VYYCVGTAYV LPEENEPTKG RILVFIVEDG RLQLIAEKET
0801: KGAVYSLNAF NGKLLAAINQ KIQLYKWMLR DDGTRELQSE CGHHGHILAL YVQTRGDFIV VGDLMKSISL LLYKHEEGAI EERARDYNAN WMSAVEILDD
0901: DIYLGAENNF NLLTVKKNSE GATDEERGRL EVVGEYHLGE FVNRFRHGSL VMRLPDSEIG QIPTVIFGTV NGVIGVIASL PQEQYTFLEK LQSSLRKVIK
1001: GVGGLSHEQW RSFNNEKRTA EARNFLDGDL IESFLDLSRN KMEDISKSMN VQVEELCKRV EELTRLH
0101: TRAMGDVSDR IGRPTDNGQV IPFDNKGQLK EAFNIRLEEL QVLDIKFLFG CAKPTIAVLY QDNKDARHVK TYEVSLKDKD FVEGPWSQNS LDNGADLLIP
0201: VPPPLCGVLI IGEETIVYCS ASAFKAIPIR PSITKAYGRV DVDGSRYLLG DHAGMIHLLV ITHEKEKVTG LKIELLGETS IASTISYLDN AVVFVGSSYG
0301: DSQLVKLNLH PDAKGSYVEV LERYINLGPI VDFCVVDLER QGQGQVVTCS GAFKDGSLRV VRNGIGINEQ ASVELQGIKG MWSLKSSIDE AFDTFLVVSF
0401: ISETRILAMN LEDELEETEI EGFLSQVQTL FCHDAVYNQL VQVTSNSVRL VSSTTRELRD EWHAPAGFTV NVATANASQV LLATGGGHLV YLEIGDGKLT
0501: EVQHALLEYE VSCLDINPIG DNPNYSQLAA VGMWTDISVR IFSLPELTLI TKEQLGGEII PRSVLLCAFE GISYLLCALG DGHLLNFQMD TTTGQLKDRK
0601: KVSLGTQPIT LRTFSSKSAT HVFAASDRPT VIYSSNKKLL YSNVNLKEVS HMCPFNSAAF PDSLAIAREG ELTIGTIDDI QKLHIRTIPL GEHARRICHQ
0701: EQTRTFGICS LGNQSNSEES EMHFVRLLDD QTFEFMSTYP LDSFEYGCSI LSCSFTEDKN VYYCVGTAYV LPEENEPTKG RILVFIVEDG RLQLIAEKET
0801: KGAVYSLNAF NGKLLAAINQ KIQLYKWMLR DDGTRELQSE CGHHGHILAL YVQTRGDFIV VGDLMKSISL LLYKHEEGAI EERARDYNAN WMSAVEILDD
0901: DIYLGAENNF NLLTVKKNSE GATDEERGRL EVVGEYHLGE FVNRFRHGSL VMRLPDSEIG QIPTVIFGTV NGVIGVIASL PQEQYTFLEK LQSSLRKVIK
1001: GVGGLSHEQW RSFNNEKRTA EARNFLDGDL IESFLDLSRN KMEDISKSMN VQVEELCKRV EELTRLH
Arabidopsis Description
DDB1ADDB1A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD4]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.