Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50606 | Canola | golgi, mitochondrion, plasma membrane | 52.14 | 19.3 |
| KRH59213 | Soybean | cytosol, plasma membrane, plastid | 65.81 | 15.4 |
| CDY69930 | Canola | plastid | 56.41 | 14.07 |
| CDY54326 | Canola | cytosol | 25.64 | 13.1 |
| HORVU3Hr1G050820.11 | Barley | plastid | 100.0 | 10.34 |
| TraesCS3B01G240600.1 | Wheat | cytosol | 88.89 | 10.06 |
| TraesCS3A01G210100.2 | Wheat | nucleus | 93.16 | 10.03 |
| GSMUA_Achr8P07200_001 | Banana | cytosol, nucleus, plasma membrane | 67.52 | 7.25 |
| AT4G21100.1 | Thale cress | nucleus | 64.96 | 6.99 |
| Solyc02g021650.2.1 | Tomato | nucleus | 64.96 | 6.94 |
| VIT_10s0003g04360.t01 | Wine grape | cytosol, nucleus, plasma membrane | 64.1 | 6.89 |
| Bra029577.1-P | Field mustard | nucleus, peroxisome, plastid | 63.25 | 6.81 |
| AT4G05420.1 | Thale cress | cytosol, nucleus, peroxisome | 63.25 | 6.8 |
| CDY57060 | Canola | cytosol, nucleus, plasma membrane | 64.1 | 6.8 |
| CDX76416 | Canola | cytosol | 63.25 | 6.56 |
| HORVU1Hr1G094530.1 | Barley | nucleus, plastid | 63.25 | 6.47 |
| Bra020884.1-P | Field mustard | cytosol | 63.25 | 5.77 |
| HORVU2Hr1G055870.14 | Barley | plastid | 32.48 | 2.79 |
| HORVU6Hr1G019130.1 | Barley | mitochondrion | 25.64 | 2.44 |
| CDY70585 | Canola | plastid | 5.98 | 1.97 |
| KRH59212 | Soybean | cytosol, nucleus | 2.56 | 0.56 |
| CDY69266 | Canola | nucleus | 0.0 | 0.0 |
| CDY68484 | Canola | cytosol, endoplasmic reticulum, vacuole | 0.0 | 0.0 |
| HORVU7Hr1G056610.1 | Barley | cytosol | 0.0 | 0.0 |
| KRH25071 | Soybean | nucleus | 0.0 | 0.0 |
| KRH43086 | Soybean | nucleus | 0.0 | 0.0 |
| PGSC0003DMT400009595 | Potato | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G056620.1 | EnsemblPlantsGene:HORVU7Hr1G056620 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | InterPro:DDB1 | InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF3 |
| PFAM:PF10433 | UniParc:UPI000B46435B | UniProt:A0A287WLD0 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrchr7H:+:238148875..238149429
Molecular Weight (calculated)
12932.6 Da
IEP (calculated)
4.763
GRAVY (calculated)
0.068
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MNIGPIVDLC VVDFERQGQG QVITCSGAYK DGSIRAIRNE LVITDQASLQ LHGMKGLWSL KCSSNDPYDT FLVVTFINKT RFLAINKENE LVETPIEGFV
101: SETQTLVCGT AIHNQLI
101: SETQTLVCGT AIHNQLI
0001: MSVWNYAVTA QKPTCVTHSC VGNFTSPQEL NLIVAKSTRI EIHLLSPQGL QTILDVPLYG RIATMELFRP HGEAQDFLFV ATERYKFCVL QWDYESSELI
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRVI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLY GCTKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: NFVEGPWSQN NLDNGADLLI PVPSPLCGVL IIGEETIVYC SANAFKAIPI RPSITKAYGR VDLDGSRYLL GDHAGLIHLL VITHEKEKVT GLKIELLGET
0301: SIASSISYLD NAVVFVGSSY GDSQLIKLNL QPDAKGSYVE ILEKYVNLGP IVDFCVVDLE RQGQGQVVTC SGAYKDGSLR IVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NIEDELEETE IEGFLSEVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR NKWDAPAGFS VNVATANASQ
0501: VLLATGGGHL VYLEIGDGTL TEVKHVLLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFVLPDLTL ITKEELGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQL DTSCGKLRDR KKVSLGTRPI TLRTFSSKSA THVFAASDRP AVIYSNNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP IGEHARRICH QEQTRTFAIS CLRNEPSAEE SESHFVRLLD AQSFEFLSSY PLDAFECGCS ILSCSFTDDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVEE GRLQLITEKE TKGAVYSLNA FNGKLLASIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI AVGDLMKSIS LLIYKHEEGA
0901: IEERARDYNA NWMTAVEILN DDIYLGTDNC FNIFTVKKNN EGATDEERAR MEVVGEYHIG EFVNRFRHGS LVMKLPDSDI GQIPTVIFGT VSGMIGVIAS
1001: LPQEQYAFLE KLQTSLRKVI KGVGGLSHEQ WRSFNNEKRT AEAKGYLDGD LIESFLDLSR GKMEEISKGM DVQVEELCKR VEELTRLH
0101: TRAMGDVSDR IGRPTDNGQI GIIDPDCRVI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLY GCTKPTIAVL YQDNKDARHV KTYEVSLKDK
0201: NFVEGPWSQN NLDNGADLLI PVPSPLCGVL IIGEETIVYC SANAFKAIPI RPSITKAYGR VDLDGSRYLL GDHAGLIHLL VITHEKEKVT GLKIELLGET
0301: SIASSISYLD NAVVFVGSSY GDSQLIKLNL QPDAKGSYVE ILEKYVNLGP IVDFCVVDLE RQGQGQVVTC SGAYKDGSLR IVRNGIGINE QASVELQGIK
0401: GMWSLKSSID EAFDTFLVVS FISETRILAM NIEDELEETE IEGFLSEVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR NKWDAPAGFS VNVATANASQ
0501: VLLATGGGHL VYLEIGDGTL TEVKHVLLEY EVSCLDINPI GDNPNYSQLA AVGMWTDISV RIFVLPDLTL ITKEELGGEI IPRSVLLCAF EGISYLLCAL
0601: GDGHLLNFQL DTSCGKLRDR KKVSLGTRPI TLRTFSSKSA THVFAASDRP AVIYSNNKKL LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD
0701: IQKLHIRTIP IGEHARRICH QEQTRTFAIS CLRNEPSAEE SESHFVRLLD AQSFEFLSSY PLDAFECGCS ILSCSFTDDK NVYYCVGTAY VLPEENEPTK
0801: GRILVFIVEE GRLQLITEKE TKGAVYSLNA FNGKLLASIN QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI AVGDLMKSIS LLIYKHEEGA
0901: IEERARDYNA NWMTAVEILN DDIYLGTDNC FNIFTVKKNN EGATDEERAR MEVVGEYHIG EFVNRFRHGS LVMKLPDSDI GQIPTVIFGT VSGMIGVIAS
1001: LPQEQYAFLE KLQTSLRKVI KGVGGLSHEQ WRSFNNEKRT AEAKGYLDGD LIESFLDLSR GKMEEISKGM DVQVEELCKR VEELTRLH
Arabidopsis Description
DDB1BDNA damage-binding protein 1b [Source:UniProtKB/Swiss-Prot;Acc:O49552]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.