Factsheet for HORVU5Hr1G057500.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G094530.1
HORVU3Hr1G050820.11
HORVU7Hr1G056610.1
HORVU7Hr1G056620.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19430.1	HORVU1Hr1G094530.1	AT4G05420.1	18223036
AT2G19430.1	HORVU3Hr1G050820.11	AT4G05420.1	18223036
AT2G19430.1	HORVU7Hr1G056610.1	AT4G05420.1	18223036
AT2G19430.1	HORVU7Hr1G056620.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G195000.2	Wheat	cytosol	76.98	78.8
TraesCS5D01G198200.1	Wheat	cytosol	76.98	78.39
TraesCS5B01G190400.1	Wheat	cytosol	77.24	78.24
EER98796	Sorghum	cytosol	67.77	69.55
Zm00001d020234_P001	Maize	cytosol	64.45	66.14
Os09t0363600-01	Rice	nucleus	45.78	64.16
KRH72217	Soybean	cytosol	17.9	59.83
CDY60743	Canola	cytosol	41.69	53.62
Solyc07g040780.2.1	Tomato	cytosol, extracellular, nucleus	11.0	53.09
VIT_11s0016g01910.t01	Wine grape	cytosol	49.36	51.88
KRH19216	Soybean	nucleus	47.06	49.2
KRH02681	Soybean	nucleus	47.06	49.2
GSMUA_Achr8P24950_001	Banana	nucleus	50.9	48.18
CDY66907	Canola	cytosol	43.48	47.49
Bra039002.1-P	Field mustard	cytosol	43.22	47.21
AT2G19430.1	Thale cress	cytosol	43.73	46.59
Solyc07g040790.2.1	Tomato	nucleus	37.34	33.56

Protein Annotations

MapMan:16.11.1.1.5	Gene3D:2.130.10.10	UniProt:A0A287RCM7	GO:GO:0000347	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719
GO:GO:0009788	GO:GO:0009987	GO:GO:0010267	GO:GO:0016567	GO:GO:0019538	GO:GO:0031047
GO:GO:0040029	GO:GO:0080008	EnsemblPlantsGene:HORVU5Hr1G057500	EnsemblPlants:HORVU5Hr1G057500.2	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR42968
PANTHER:PTHR42968:SF3	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000B470029	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr5H:-:450801647..450808686

Molecular Weight (calculated)

42504.2 Da

IEP (calculated)

8.501

GRAVY (calculated)

-0.083

Length

391 amino acids

Sequence
(BLAST)

001: GSVPAGHPAG ARPLLPHPLP RRLLRPARRT RPGRPPRRRL QRRLPRVLLA VLLHLLLRLR PRRPSGFASP LLPHSLLYLF RVYKHPDSLD LIQPAAAALV
101: DPVCIVQAHS GPVYDAKFYN DPIQPLLFSC GDDGHIRGWR WQEMQSCLVP LSLQGDHVEP ILDLVNPQHE GPWGARSPIP ENNAIAISKQ DGSLFAAAGD
201: ACAYCWDVES GKCKMTFKGH TDYLHSVAVR EANHQVVTGS EDGTARIWDC RSGKCTQTIH PVQNKKFEGS WVGCIAIDAS ESWLACGTSN GISVWSLLSN
301: ECIFNADCGA PVQDLLFDKN QILAVGAEPA LSRFTINGVV VSQIKCAPPS AFSVSMHSSG MAAVAGHGGL VDVISGFGSH LCAFRCRGLD R

Best Arabidopsis Sequence Match ( AT2G19430.1 )
(BLAST)

001: MYGDATNWNE DEYRESILKE REIETRTVFR TAWAPPARIS NPDAFVVASS DGTLAFHSLN SLVSQSASFG YSKGQDVMVA EPERVVRAHE GPAYDVKFYG
101: EDEDALLLSC GDDGRVRGWK WREFAESDVS LHLKENHLKP LLELINPQHK GPWGALSPMP EINAMSVDPQ SGSVFTAAGD SCAYCWDVES GKIKMTFKGH
201: SDYLHTVVSR SSASQILTGS EDGTARIWDC KTGKCVKVIG SQDKKSRLRV SSMALDGSES WLVCGQGKNL ALWNLPASEC VQTIPIPAHV QDVMFDEKQI
301: LTVGAEPLLR RFDLNGALLS QIHCAPCSVF SISLHPAGVV AVGGYGGIVD VISQFGSHLC TFRSSSL

Arabidopsis Description

THO6THO complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4M1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.