Factsheet for Solyc07g040790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g021650.2.1
Solyc05g007420.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19430.1	Solyc05g007420.1.1	AT1G69690.1	21798944
AT2G19430.1	Solyc02g021650.2.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72217	Soybean	cytosol	18.85	70.09
VIT_11s0016g01910.t01	Wine grape	cytosol	48.97	57.26
KRH19216	Soybean	nucleus	46.67	54.28
KRH02681	Soybean	nucleus	46.44	54.01
Bra039002.1-P	Field mustard	cytosol	41.38	50.28
CDY66907	Canola	cytosol	41.38	50.28
Os09t0363600-01	Rice	nucleus	32.18	50.18
CDY60743	Canola	cytosol	34.25	49.01
AT2G19430.1	Thale cress	cytosol	41.15	48.77
TraesCS5D01G198200.1	Wheat	cytosol	38.85	44.01
TraesCS5A01G195000.2	Wheat	cytosol	38.39	43.72
TraesCS5B01G190400.1	Wheat	cytosol	38.62	43.52
EER98796	Sorghum	cytosol	37.7	43.04
Zm00001d020234_P001	Maize	cytosol	36.32	41.47
GSMUA_Achr8P24950_001	Banana	nucleus	39.08	41.16
HORVU5Hr1G057500.2	Barley	plastid	33.56	37.34
Solyc07g040780.2.1	Tomato	cytosol, extracellular, nucleus	2.53	13.58

Protein Annotations

MapMan:16.11.1.1.5	Gene3D:2.130.10.10	GO:GO:0000347	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009788
GO:GO:0009987	GO:GO:0010267	GO:GO:0016567	GO:GO:0019538	GO:GO:0031047	GO:GO:0040029
GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4CDV6	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR42968	PANTHER:PTHR42968:SF3	SMART:SM00320
SUPFAM:SSF50978	EnsemblPlantsGene:Solyc07g040790.2	EnsemblPlants:Solyc07g040790.2.1	UniParc:UPI000276B628	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

THO complex subunit 6 [Source:Projected from Arabidopsis thaliana (AT2G19430) UniProtKB/Swiss-Prot;Acc:Q8L4M1]

Coordinates

chr7:-:49726869..49744490

Molecular Weight (calculated)

47974.4 Da

IEP (calculated)

6.346

GRAVY (calculated)

-0.452

Length

435 amino acids

Sequence
(BLAST)

001: MATAMDCRNW EEDIYRDSII LERESQCRTV FRTAFAPNPD HNSYPDLIVA AISDGSIAAY SISSCLGLNS AGNSLVPVAE PSWLVQGHDG PAYDVKFYGN
101: HEDSLLLSCG DDGRIRGWKW KEMLGSTESA QGGVSKPVLD LVNPQKKGPW GALSPIPENN CVAVNTQTGS IFAASGDSCA YCWDVETNEI KMVLKGHSDY
201: LHCIVARNSH NQVITGSEDG TARIWDCRTG KCIQIIDPQK DKKLKELYPY VSCIALDASE SWLACGSGQS LSVWNLPACE CVSGITTSAA TQDVSFDDNQ
301: GSRRTWHDMR MDLVKEKAES PMVESYRKIV SGSSGHYEIR RKKKWGKRLN YAQDNSTMPT FFDRDMNADT LVKLTGHVGT SVRWGKFRSK THGVPSNIEG
401: PFKDNFGPLT QPLNLGPILR PTKADPNNSD ISQFL

Best Arabidopsis Sequence Match ( AT2G19430.1 )
(BLAST)

001: MYGDATNWNE DEYRESILKE REIETRTVFR TAWAPPARIS NPDAFVVASS DGTLAFHSLN SLVSQSASFG YSKGQDVMVA EPERVVRAHE GPAYDVKFYG
101: EDEDALLLSC GDDGRVRGWK WREFAESDVS LHLKENHLKP LLELINPQHK GPWGALSPMP EINAMSVDPQ SGSVFTAAGD SCAYCWDVES GKIKMTFKGH
201: SDYLHTVVSR SSASQILTGS EDGTARIWDC KTGKCVKVIG SQDKKSRLRV SSMALDGSES WLVCGQGKNL ALWNLPASEC VQTIPIPAHV QDVMFDEKQI
301: LTVGAEPLLR RFDLNGALLS QIHCAPCSVF SISLHPAGVV AVGGYGGIVD VISQFGSHLC TFRSSSL

Arabidopsis Description

THO6THO complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4M1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.