CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG22678

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19430.1	KXG22678	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020234_P001	Maize	cytosol	93.44	93.44
Os09t0363600-01	Rice	nucleus	60.63	82.8
TraesCS5A01G195000.2	Wheat	cytosol	79.53	79.32
TraesCS5D01G198200.1	Wheat	cytosol	79.0	78.39
TraesCS5B01G190400.1	Wheat	cytosol	78.74	77.72
HORVU5Hr1G057500.2	Barley	plastid	69.55	67.77
KRH72217	Soybean	cytosol	18.11	58.97
VIT_11s0016g01910.t01	Wine grape	cytosol	57.22	58.6
KRH02681	Soybean	nucleus	54.59	55.62
CDY60743	Canola	cytosol	44.36	55.59
GSMUA_Achr8P24950_001	Banana	nucleus	59.06	54.48
Solyc07g040780.2.1	Tomato	cytosol, extracellular, nucleus	11.55	54.32
KRH19216	Soybean	nucleus	53.28	54.28
CDY66907	Canola	cytosol	49.08	52.23
Bra039002.1-P	Field mustard	cytosol	48.56	51.68
AT2G19430.1	Thale cress	cytosol	49.08	50.95
Solyc07g040790.2.1	Tomato	nucleus	43.04	37.7

Protein Annotations

MapMan:16.11.1.1.5	Gene3D:2.130.10.10	EntrezGene:8055579	UniProt:C5XAP5	EnsemblPlants:EER98796	ProteinID:EER98796
ProteinID:EER98796.1	GO:GO:0000347	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009788	GO:GO:0009987
GO:GO:0010267	GO:GO:0016567	GO:GO:0019538	GO:GO:0031047	GO:GO:0040029	GO:GO:0080008
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR42968	PANTHER:PTHR42968:SF3	SMART:SM00320	EnsemblPlantsGene:SORBI_3002G181400	SUPFAM:SSF50978
unigene:Sbi.6990	UniParc:UPI0001A83E65	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_002462275.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:56251174..56255466

Molecular Weight (calculated)

40599.7 Da

IEP (calculated)

5.167

GRAVY (calculated)

-0.009

Length

381 amino acids

Sequence
(BLAST)

001: MAAAAAQSHP ASMDARGWDE ASYRRGILRA RDLSSRTLFR AVFFDHSDDP DPDVLLAAAS SDGSLASFSL STCISAGSAA SQVETAAVLV DPVCIVQAHS
101: GPAYDVRFYP DPQQPLLFSC GDDGRIRGWR WHEMQSCLVP LSLQGDHLEP ALDLVNPQHE GPWGARSPIP ENNAIAINKQ DGSILAAAGD ACAYCWDVET
201: GKCKITFKGH ADYLHSVAVR ESNRQVVTGS EDGTARIWDC RSGKCMQVIH PVKSKAFDSS WVSCVAIDAS ESWLACGTSS GISVWSLLSN ECIFNLDCHA
301: PVQDLLFDKN QILAVGAEPV LSRLTINGTV LSQIKCAPQS AFSVSMHSSG IAAVAGYGGL VDVISEVGSH LCTFGSRGLD K

Best Arabidopsis Sequence Match ( AT2G19430.1 )
(BLAST)

001: MYGDATNWNE DEYRESILKE REIETRTVFR TAWAPPARIS NPDAFVVASS DGTLAFHSLN SLVSQSASFG YSKGQDVMVA EPERVVRAHE GPAYDVKFYG
101: EDEDALLLSC GDDGRVRGWK WREFAESDVS LHLKENHLKP LLELINPQHK GPWGALSPMP EINAMSVDPQ SGSVFTAAGD SCAYCWDVES GKIKMTFKGH
201: SDYLHTVVSR SSASQILTGS EDGTARIWDC KTGKCVKVIG SQDKKSRLRV SSMALDGSES WLVCGQGKNL ALWNLPASEC VQTIPIPAHV QDVMFDEKQI
301: LTVGAEPLLR RFDLNGALLS QIHCAPCSVF SISLHPAGVV AVGGYGGIVD VISQFGSHLC TFRSSSL

Arabidopsis Description

THO6THO complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4M1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.